Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03490 and ABID97_RS03495 overlap by 46 nucleotides ABID97_RS03495 and ABID97_RS03500 are separated by 19 nucleotides
ABID97_RS03490: ABID97_RS03490 - amidohydrolase family protein, at 711,505 to 712,704
_RS03490
ABID97_RS03495: ABID97_RS03495 - TetR family transcriptional regulator, at 712,659 to 713,423
_RS03495
ABID97_RS03500: ABID97_RS03500 - ferredoxin--NADP reductase, at 713,443 to 714,216
_RS03500
Position (kb) 712
713
714 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 712.121 kb on + strand, within ABID97_RS03490 at 712.122 kb on - strand, within ABID97_RS03490 at 712.158 kb on - strand, within ABID97_RS03490 at 712.660 kb on + strand at 712.661 kb on - strand at 712.661 kb on - strand at 712.877 kb on - strand, within ABID97_RS03495 at 712.877 kb on - strand, within ABID97_RS03495 at 712.882 kb on + strand, within ABID97_RS03495 at 712.882 kb on + strand, within ABID97_RS03495 at 712.883 kb on - strand, within ABID97_RS03495 at 712.907 kb on - strand, within ABID97_RS03495 at 712.907 kb on - strand, within ABID97_RS03495 at 713.089 kb on + strand, within ABID97_RS03495 at 713.185 kb on + strand, within ABID97_RS03495 at 713.185 kb on + strand, within ABID97_RS03495 at 713.185 kb on + strand, within ABID97_RS03495 at 713.185 kb on + strand, within ABID97_RS03495 at 713.185 kb on + strand, within ABID97_RS03495 at 713.185 kb on + strand, within ABID97_RS03495 at 713.186 kb on - strand, within ABID97_RS03495 at 713.186 kb on - strand, within ABID97_RS03495 at 713.186 kb on - strand, within ABID97_RS03495 at 713.233 kb on + strand, within ABID97_RS03495 at 713.233 kb on + strand, within ABID97_RS03495 at 713.234 kb on - strand, within ABID97_RS03495 at 713.234 kb on - strand, within ABID97_RS03495 at 713.237 kb on - strand, within ABID97_RS03495 at 713.239 kb on + strand, within ABID97_RS03495 at 713.239 kb on + strand, within ABID97_RS03495 at 713.239 kb on + strand, within ABID97_RS03495 at 713.239 kb on + strand, within ABID97_RS03495 at 713.240 kb on - strand, within ABID97_RS03495 at 713.240 kb on - strand, within ABID97_RS03495 at 713.240 kb on - strand, within ABID97_RS03495 at 713.300 kb on - strand, within ABID97_RS03495 at 713.444 kb on + strand at 714.217 kb on - strand at 714.217 kb on - strand at 714.217 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 712,121 + ABID97_RS03490 0.51 +0.5 712,122 - ABID97_RS03490 0.51 -0.3 712,158 - ABID97_RS03490 0.54 -1.6 712,660 + -1.8 712,661 - +0.0 712,661 - +0.2 712,877 - ABID97_RS03495 0.28 +1.2 712,877 - ABID97_RS03495 0.28 -3.1 712,882 + ABID97_RS03495 0.29 +0.2 712,882 + ABID97_RS03495 0.29 -2.9 712,883 - ABID97_RS03495 0.29 -2.4 712,907 - ABID97_RS03495 0.32 -2.9 712,907 - ABID97_RS03495 0.32 -2.4 713,089 + ABID97_RS03495 0.56 -1.5 713,185 + ABID97_RS03495 0.69 -1.9 713,185 + ABID97_RS03495 0.69 -2.8 713,185 + ABID97_RS03495 0.69 -3.2 713,185 + ABID97_RS03495 0.69 -2.9 713,185 + ABID97_RS03495 0.69 -0.8 713,185 + ABID97_RS03495 0.69 -2.0 713,186 - ABID97_RS03495 0.69 -0.8 713,186 - ABID97_RS03495 0.69 -1.6 713,186 - ABID97_RS03495 0.69 -2.8 713,233 + ABID97_RS03495 0.75 -2.5 713,233 + ABID97_RS03495 0.75 -1.4 713,234 - ABID97_RS03495 0.75 -3.5 713,234 - ABID97_RS03495 0.75 -2.9 713,237 - ABID97_RS03495 0.76 -4.4 713,239 + ABID97_RS03495 0.76 -3.1 713,239 + ABID97_RS03495 0.76 -1.5 713,239 + ABID97_RS03495 0.76 -2.2 713,239 + ABID97_RS03495 0.76 -1.7 713,240 - ABID97_RS03495 0.76 -2.2 713,240 - ABID97_RS03495 0.76 -2.5 713,240 - ABID97_RS03495 0.76 -2.9 713,300 - ABID97_RS03495 0.84 -2.0 713,444 + -2.6 714,217 - +0.5 714,217 - -1.2 714,217 - +0.1
Or see this region's nucleotide sequence