Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03330 and ABID97_RS03335 overlap by 4 nucleotides ABID97_RS03335 and ABID97_RS03340 are separated by 41 nucleotides
ABID97_RS03330: ABID97_RS03330 - AMP-binding protein, at 671,471 to 674,383
_RS03330
ABID97_RS03335: ABID97_RS03335 - TetR/AcrR family transcriptional regulator, at 674,380 to 675,090
_RS03335
ABID97_RS03340: ABID97_RS03340 - nucleoside recognition domain-containing protein, at 675,132 to 676,361
_RS03340
Position (kb) 674
675
676 Strain fitness (log2 ratio) -2
-1
0
1
2 at 673.427 kb on + strand, within ABID97_RS03330 at 673.427 kb on + strand, within ABID97_RS03330 at 673.428 kb on - strand, within ABID97_RS03330 at 673.428 kb on - strand, within ABID97_RS03330 at 673.428 kb on - strand, within ABID97_RS03330 at 673.629 kb on - strand, within ABID97_RS03330 at 673.863 kb on - strand, within ABID97_RS03330 at 674.180 kb on + strand at 674.180 kb on + strand at 674.181 kb on - strand at 674.249 kb on + strand at 674.250 kb on - strand at 674.250 kb on - strand at 674.381 kb on + strand at 674.382 kb on - strand at 674.672 kb on + strand, within ABID97_RS03335 at 674.672 kb on + strand, within ABID97_RS03335 at 674.673 kb on - strand, within ABID97_RS03335 at 674.673 kb on - strand, within ABID97_RS03335 at 674.981 kb on + strand, within ABID97_RS03335 at 674.981 kb on + strand, within ABID97_RS03335 at 674.982 kb on - strand, within ABID97_RS03335 at 675.148 kb on + strand at 675.149 kb on - strand at 675.149 kb on - strand at 675.244 kb on + strand at 675.259 kb on + strand, within ABID97_RS03340 at 675.259 kb on + strand, within ABID97_RS03340 at 675.260 kb on - strand, within ABID97_RS03340 at 675.260 kb on - strand, within ABID97_RS03340 at 675.260 kb on - strand, within ABID97_RS03340 at 675.260 kb on - strand, within ABID97_RS03340 at 675.520 kb on + strand, within ABID97_RS03340 at 675.521 kb on - strand, within ABID97_RS03340 at 675.581 kb on - strand, within ABID97_RS03340 at 675.581 kb on - strand, within ABID97_RS03340 at 675.742 kb on + strand, within ABID97_RS03340 at 675.743 kb on - strand, within ABID97_RS03340 at 675.743 kb on - strand, within ABID97_RS03340 at 675.883 kb on + strand, within ABID97_RS03340 at 675.883 kb on + strand, within ABID97_RS03340 at 675.884 kb on - strand, within ABID97_RS03340
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 673,427 + ABID97_RS03330 0.67 +2.2 673,427 + ABID97_RS03330 0.67 -0.7 673,428 - ABID97_RS03330 0.67 -0.5 673,428 - ABID97_RS03330 0.67 -0.0 673,428 - ABID97_RS03330 0.67 +0.3 673,629 - ABID97_RS03330 0.74 -1.7 673,863 - ABID97_RS03330 0.82 +0.3 674,180 + -0.2 674,180 + +0.4 674,181 - -0.2 674,249 + +0.4 674,250 - -0.2 674,250 - -0.8 674,381 + -0.5 674,382 - -0.4 674,672 + ABID97_RS03335 0.41 +0.2 674,672 + ABID97_RS03335 0.41 +2.7 674,673 - ABID97_RS03335 0.41 -0.3 674,673 - ABID97_RS03335 0.41 +0.2 674,981 + ABID97_RS03335 0.85 -0.3 674,981 + ABID97_RS03335 0.85 +0.1 674,982 - ABID97_RS03335 0.85 +0.0 675,148 + +0.9 675,149 - -0.0 675,149 - -0.8 675,244 + +0.2 675,259 + ABID97_RS03340 0.10 -0.3 675,259 + ABID97_RS03340 0.10 +0.2 675,260 - ABID97_RS03340 0.10 -0.4 675,260 - ABID97_RS03340 0.10 +0.4 675,260 - ABID97_RS03340 0.10 +0.0 675,260 - ABID97_RS03340 0.10 +2.0 675,520 + ABID97_RS03340 0.32 -1.6 675,521 - ABID97_RS03340 0.32 +0.3 675,581 - ABID97_RS03340 0.37 -0.5 675,581 - ABID97_RS03340 0.37 +0.1 675,742 + ABID97_RS03340 0.50 -2.1 675,743 - ABID97_RS03340 0.50 -0.2 675,743 - ABID97_RS03340 0.50 +0.0 675,883 + ABID97_RS03340 0.61 +0.3 675,883 + ABID97_RS03340 0.61 +0.4 675,884 - ABID97_RS03340 0.61 -0.8
Or see this region's nucleotide sequence