Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02570

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02560 and ABID97_RS02565 are separated by 8 nucleotidesABID97_RS02565 and ABID97_RS02570 overlap by 4 nucleotidesABID97_RS02570 and ABID97_RS02575 are separated by 90 nucleotidesABID97_RS02575 and ABID97_RS02580 are separated by 18 nucleotides ABID97_RS02560: ABID97_RS02560 - MFS transporter, at 524,102 to 525,277 _RS02560 ABID97_RS02565: ABID97_RS02565 - lysophospholipase, at 525,286 to 526,149 _RS02565 ABID97_RS02570: ABID97_RS02570 - M20 family metallopeptidase, at 526,146 to 527,657 _RS02570 ABID97_RS02575: ABID97_RS02575 - DUF72 domain-containing protein, at 527,748 to 528,545 _RS02575 ABID97_RS02580: ABID97_RS02580 - polymer-forming cytoskeletal protein, at 528,564 to 529,079 _RS02580 Position (kb) 526 527 528Strain fitness (log2 ratio) -2 -1 0 1 2 3at 525.188 kb on + strandat 525.188 kb on + strandat 525.188 kb on + strandat 525.188 kb on + strandat 525.189 kb on - strandat 525.189 kb on - strandat 525.361 kb on + strandat 525.361 kb on + strandat 525.361 kb on + strandat 525.361 kb on + strandat 525.361 kb on + strandat 525.362 kb on - strandat 525.362 kb on - strandat 525.362 kb on - strandat 525.362 kb on - strandat 525.362 kb on - strandat 525.362 kb on - strandat 525.371 kb on + strandat 525.371 kb on + strandat 525.371 kb on + strandat 525.371 kb on + strandat 525.473 kb on + strand, within ABID97_RS02565at 525.473 kb on + strand, within ABID97_RS02565at 525.473 kb on + strand, within ABID97_RS02565at 525.473 kb on + strand, within ABID97_RS02565at 525.473 kb on + strand, within ABID97_RS02565at 525.473 kb on + strand, within ABID97_RS02565at 525.473 kb on + strand, within ABID97_RS02565at 525.474 kb on - strand, within ABID97_RS02565at 525.474 kb on - strand, within ABID97_RS02565at 526.238 kb on - strandat 526.238 kb on - strandat 526.238 kb on - strandat 526.372 kb on + strand, within ABID97_RS02570at 526.373 kb on - strand, within ABID97_RS02570at 526.373 kb on - strand, within ABID97_RS02570at 526.373 kb on - strand, within ABID97_RS02570at 526.373 kb on - strand, within ABID97_RS02570at 526.499 kb on - strand, within ABID97_RS02570at 526.594 kb on + strand, within ABID97_RS02570at 526.594 kb on + strand, within ABID97_RS02570at 526.595 kb on - strand, within ABID97_RS02570at 526.595 kb on - strand, within ABID97_RS02570at 526.595 kb on - strand, within ABID97_RS02570at 526.595 kb on - strand, within ABID97_RS02570at 526.744 kb on + strand, within ABID97_RS02570at 526.744 kb on + strand, within ABID97_RS02570at 526.744 kb on + strand, within ABID97_RS02570at 526.744 kb on + strand, within ABID97_RS02570at 526.745 kb on - strand, within ABID97_RS02570at 526.745 kb on - strand, within ABID97_RS02570at 526.745 kb on - strand, within ABID97_RS02570at 526.768 kb on + strand, within ABID97_RS02570at 526.768 kb on + strand, within ABID97_RS02570at 526.768 kb on + strand, within ABID97_RS02570at 526.768 kb on + strand, within ABID97_RS02570at 526.769 kb on - strand, within ABID97_RS02570at 526.769 kb on - strand, within ABID97_RS02570at 526.769 kb on - strand, within ABID97_RS02570at 526.769 kb on - strand, within ABID97_RS02570at 526.769 kb on - strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.026 kb on + strand, within ABID97_RS02570at 527.027 kb on - strand, within ABID97_RS02570at 527.027 kb on - strand, within ABID97_RS02570at 527.027 kb on - strand, within ABID97_RS02570at 527.098 kb on + strand, within ABID97_RS02570at 527.098 kb on + strand, within ABID97_RS02570at 527.098 kb on + strand, within ABID97_RS02570at 527.099 kb on - strand, within ABID97_RS02570at 527.099 kb on - strand, within ABID97_RS02570at 527.099 kb on - strandat 527.099 kb on - strand, within ABID97_RS02570at 527.099 kb on - strand, within ABID97_RS02570at 527.113 kb on + strand, within ABID97_RS02570at 527.114 kb on - strand, within ABID97_RS02570at 527.114 kb on - strand, within ABID97_RS02570at 527.114 kb on - strand, within ABID97_RS02570at 527.209 kb on + strand, within ABID97_RS02570at 527.245 kb on + strand, within ABID97_RS02570at 527.263 kb on + strand, within ABID97_RS02570at 527.263 kb on + strand, within ABID97_RS02570at 527.263 kb on + strand, within ABID97_RS02570at 527.264 kb on - strand, within ABID97_RS02570at 527.264 kb on - strand, within ABID97_RS02570at 527.264 kb on - strand, within ABID97_RS02570at 527.333 kb on - strand, within ABID97_RS02570at 527.333 kb on - strand, within ABID97_RS02570at 527.333 kb on - strand, within ABID97_RS02570at 527.333 kb on - strand, within ABID97_RS02570at 527.489 kb on - strand, within ABID97_RS02570at 527.545 kb on + strandat 527.545 kb on + strandat 527.545 kb on + strandat 527.545 kb on + strandat 527.545 kb on + strandat 527.545 kb on + strandat 527.546 kb on - strandat 527.546 kb on - strandat 527.546 kb on - strandat 527.716 kb on - strandat 527.716 kb on - strandat 527.811 kb on + strandat 527.811 kb on + strandat 527.812 kb on - strandat 527.812 kb on - strandat 527.812 kb on - strandat 527.812 kb on - strandat 527.835 kb on + strand, within ABID97_RS02575at 527.835 kb on + strand, within ABID97_RS02575at 527.872 kb on - strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.913 kb on + strand, within ABID97_RS02575at 527.914 kb on - strand, within ABID97_RS02575at 527.914 kb on - strand, within ABID97_RS02575at 527.914 kb on - strand, within ABID97_RS02575at 527.914 kb on - strand, within ABID97_RS02575at 527.914 kb on - strand, within ABID97_RS02575at 527.914 kb on - strand, within ABID97_RS02575at 527.914 kb on - strand, within ABID97_RS02575at 527.916 kb on + strand, within ABID97_RS02575at 527.916 kb on + strand, within ABID97_RS02575at 527.916 kb on + strand, within ABID97_RS02575at 527.916 kb on + strand, within ABID97_RS02575at 527.916 kb on + strand, within ABID97_RS02575at 527.916 kb on + strand, within ABID97_RS02575at 527.916 kb on + strand, within ABID97_RS02575at 527.917 kb on - strand, within ABID97_RS02575at 527.917 kb on - strand, within ABID97_RS02575at 527.917 kb on - strand, within ABID97_RS02575at 527.917 kb on - strand, within ABID97_RS02575at 527.917 kb on - strand, within ABID97_RS02575at 527.917 kb on - strand, within ABID97_RS02575at 527.917 kb on - strand, within ABID97_RS02575at 528.258 kb on + strand, within ABID97_RS02575at 528.258 kb on + strand, within ABID97_RS02575at 528.258 kb on + strand, within ABID97_RS02575at 528.259 kb on - strand, within ABID97_RS02575at 528.259 kb on - strand, within ABID97_RS02575at 528.330 kb on + strand, within ABID97_RS02575at 528.373 kb on - strand, within ABID97_RS02575at 528.454 kb on - strand, within ABID97_RS02575at 528.454 kb on - strand, within ABID97_RS02575at 528.454 kb on - strand, within ABID97_RS02575at 528.650 kb on - strand, within ABID97_RS02580

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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525,188 + +0.2
525,188 + +0.0
525,188 + +0.5
525,188 + +0.2
525,189 - -0.2
525,189 - +0.2
525,361 + -1.1
525,361 + +0.1
525,361 + -0.5
525,361 + +0.0
525,361 + -0.0
525,362 - -0.6
525,362 - +0.2
525,362 - +0.6
525,362 - -1.0
525,362 - -0.5
525,362 - +0.0
525,371 + -0.7
525,371 + -0.5
525,371 + +0.0
525,371 + +0.1
525,473 + ABID97_RS02565 0.22 +0.1
525,473 + ABID97_RS02565 0.22 +0.1
525,473 + ABID97_RS02565 0.22 +0.4
525,473 + ABID97_RS02565 0.22 +0.3
525,473 + ABID97_RS02565 0.22 +1.6
525,473 + ABID97_RS02565 0.22 +0.4
525,473 + ABID97_RS02565 0.22 +0.7
525,474 - ABID97_RS02565 0.22 +0.7
525,474 - ABID97_RS02565 0.22 -2.5
526,238 - -0.0
526,238 - +0.6
526,238 - +0.4
526,372 + ABID97_RS02570 0.15 +0.3
526,373 - ABID97_RS02570 0.15 +0.3
526,373 - ABID97_RS02570 0.15 +0.0
526,373 - ABID97_RS02570 0.15 +0.6
526,373 - ABID97_RS02570 0.15 +0.8
526,499 - ABID97_RS02570 0.23 +0.4
526,594 + ABID97_RS02570 0.30 +0.0
526,594 + ABID97_RS02570 0.30 +0.3
526,595 - ABID97_RS02570 0.30 +0.6
526,595 - ABID97_RS02570 0.30 +0.1
526,595 - ABID97_RS02570 0.30 +0.1
526,595 - ABID97_RS02570 0.30 -2.4
526,744 + ABID97_RS02570 0.40 +0.3
526,744 + ABID97_RS02570 0.40 -0.1
526,744 + ABID97_RS02570 0.40 +0.5
526,744 + ABID97_RS02570 0.40 -0.3
526,745 - ABID97_RS02570 0.40 -0.7
526,745 - ABID97_RS02570 0.40 +0.5
526,745 - ABID97_RS02570 0.40 +0.3
526,768 + ABID97_RS02570 0.41 +3.4
526,768 + ABID97_RS02570 0.41 -0.1
526,768 + ABID97_RS02570 0.41 +0.3
526,768 + ABID97_RS02570 0.41 +0.3
526,769 - ABID97_RS02570 0.41 -0.6
526,769 - ABID97_RS02570 0.41 +0.8
526,769 - ABID97_RS02570 0.41 +0.5
526,769 - ABID97_RS02570 0.41 -1.2
526,769 - ABID97_RS02570 0.41 -0.3
527,026 + ABID97_RS02570 0.58 +0.3
527,026 + ABID97_RS02570 0.58 +0.1
527,026 + ABID97_RS02570 0.58 -0.1
527,026 + ABID97_RS02570 0.58 +0.6
527,026 + ABID97_RS02570 0.58 -0.1
527,026 + ABID97_RS02570 0.58 -0.7
527,026 + ABID97_RS02570 0.58 -0.2
527,026 + ABID97_RS02570 0.58 -0.2
527,026 + ABID97_RS02570 0.58 -1.1
527,026 + ABID97_RS02570 0.58 -0.2
527,027 - ABID97_RS02570 0.58 -0.1
527,027 - ABID97_RS02570 0.58 +0.4
527,027 - ABID97_RS02570 0.58 +0.7
527,098 + ABID97_RS02570 0.63 -0.9
527,098 + ABID97_RS02570 0.63 -0.8
527,098 + ABID97_RS02570 0.63 +0.5
527,099 - ABID97_RS02570 0.63 -2.0
527,099 - ABID97_RS02570 0.63 +0.3
527,099 - +1.2
527,099 - ABID97_RS02570 0.63 +0.4
527,099 - ABID97_RS02570 0.63 +3.1
527,113 + ABID97_RS02570 0.64 -0.2
527,114 - ABID97_RS02570 0.64 -0.0
527,114 - ABID97_RS02570 0.64 +0.6
527,114 - ABID97_RS02570 0.64 +0.4
527,209 + ABID97_RS02570 0.70 -0.0
527,245 + ABID97_RS02570 0.73 -0.2
527,263 + ABID97_RS02570 0.74 -0.1
527,263 + ABID97_RS02570 0.74 -0.3
527,263 + ABID97_RS02570 0.74 -0.8
527,264 - ABID97_RS02570 0.74 -0.1
527,264 - ABID97_RS02570 0.74 +0.4
527,264 - ABID97_RS02570 0.74 -1.4
527,333 - ABID97_RS02570 0.79 -0.8
527,333 - ABID97_RS02570 0.79 +0.4
527,333 - ABID97_RS02570 0.79 +0.4
527,333 - ABID97_RS02570 0.79 -1.0
527,489 - ABID97_RS02570 0.89 +0.1
527,545 + +0.3
527,545 + +0.4
527,545 + -1.2
527,545 + +1.1
527,545 + -0.1
527,545 + +0.2
527,546 - +0.3
527,546 - -0.1
527,546 - -0.3
527,716 - +0.4
527,716 - -0.4
527,811 + +0.4
527,811 + -0.5
527,812 - -0.5
527,812 - +0.2
527,812 - +0.1
527,812 - -0.8
527,835 + ABID97_RS02575 0.11 -1.1
527,835 + ABID97_RS02575 0.11 +0.7
527,872 - ABID97_RS02575 0.16 +0.1
527,913 + ABID97_RS02575 0.21 +0.6
527,913 + ABID97_RS02575 0.21 +0.3
527,913 + ABID97_RS02575 0.21 +0.7
527,913 + ABID97_RS02575 0.21 +0.3
527,913 + ABID97_RS02575 0.21 -0.3
527,913 + ABID97_RS02575 0.21 -0.1
527,913 + ABID97_RS02575 0.21 -1.6
527,913 + ABID97_RS02575 0.21 -0.0
527,913 + ABID97_RS02575 0.21 -0.4
527,913 + ABID97_RS02575 0.21 +0.3
527,913 + ABID97_RS02575 0.21 -0.2
527,913 + ABID97_RS02575 0.21 +0.1
527,914 - ABID97_RS02575 0.21 +0.5
527,914 - ABID97_RS02575 0.21 -0.0
527,914 - ABID97_RS02575 0.21 +1.2
527,914 - ABID97_RS02575 0.21 -0.3
527,914 - ABID97_RS02575 0.21 -0.2
527,914 - ABID97_RS02575 0.21 +0.8
527,914 - ABID97_RS02575 0.21 -0.2
527,916 + ABID97_RS02575 0.21 -0.1
527,916 + ABID97_RS02575 0.21 +0.1
527,916 + ABID97_RS02575 0.21 +0.1
527,916 + ABID97_RS02575 0.21 -0.4
527,916 + ABID97_RS02575 0.21 -0.4
527,916 + ABID97_RS02575 0.21 +0.0
527,916 + ABID97_RS02575 0.21 +0.5
527,917 - ABID97_RS02575 0.21 +0.2
527,917 - ABID97_RS02575 0.21 +0.1
527,917 - ABID97_RS02575 0.21 -0.7
527,917 - ABID97_RS02575 0.21 +0.5
527,917 - ABID97_RS02575 0.21 -0.2
527,917 - ABID97_RS02575 0.21 -2.3
527,917 - ABID97_RS02575 0.21 +0.3
528,258 + ABID97_RS02575 0.64 +0.6
528,258 + ABID97_RS02575 0.64 -0.0
528,258 + ABID97_RS02575 0.64 -0.3
528,259 - ABID97_RS02575 0.64 -0.0
528,259 - ABID97_RS02575 0.64 +0.1
528,330 + ABID97_RS02575 0.73 -0.1
528,373 - ABID97_RS02575 0.78 -0.0
528,454 - ABID97_RS02575 0.88 +1.2
528,454 - ABID97_RS02575 0.88 -0.2
528,454 - ABID97_RS02575 0.88 -0.5
528,650 - ABID97_RS02580 0.17 -0.1

Or see this region's nucleotide sequence