Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00515 and ABID97_RS00520 overlap by 4 nucleotides ABID97_RS00520 and ABID97_RS00525 are separated by 10 nucleotides ABID97_RS00525 and ABID97_RS00530 are separated by 77 nucleotides ABID97_RS00530 and ABID97_RS00535 are separated by 7 nucleotides
ABID97_RS00515: ABID97_RS00515 - SLC13 family permease, at 112,152 to 113,282
_RS00515
ABID97_RS00520: ABID97_RS00520 - AraC family transcriptional regulator, at 113,279 to 114,031
_RS00520
ABID97_RS00525: ABID97_RS00525 - DMT family transporter, at 114,042 to 114,887
_RS00525
ABID97_RS00530: ABID97_RS00530 - hypothetical protein, at 114,965 to 115,288
_RS00530
ABID97_RS00535: ABID97_RS00535 - NADP-dependent oxidoreductase, at 115,296 to 116,339
_RS00535
Position (kb) 114
115 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 113.315 kb on + strand at 113.576 kb on + strand, within ABID97_RS00520 at 113.576 kb on + strand, within ABID97_RS00520 at 113.576 kb on + strand, within ABID97_RS00520 at 113.577 kb on - strand, within ABID97_RS00520 at 113.577 kb on - strand, within ABID97_RS00520 at 114.029 kb on + strand at 114.240 kb on + strand, within ABID97_RS00525 at 114.240 kb on + strand, within ABID97_RS00525 at 114.240 kb on + strand, within ABID97_RS00525 at 114.240 kb on + strand, within ABID97_RS00525 at 114.240 kb on + strand, within ABID97_RS00525 at 114.241 kb on - strand, within ABID97_RS00525 at 114.241 kb on - strand, within ABID97_RS00525 at 114.241 kb on - strand, within ABID97_RS00525 at 114.241 kb on - strand, within ABID97_RS00525 at 114.241 kb on - strand, within ABID97_RS00525 at 114.241 kb on - strand, within ABID97_RS00525 at 114.241 kb on - strand, within ABID97_RS00525 at 114.241 kb on - strand, within ABID97_RS00525 at 114.318 kb on + strand, within ABID97_RS00525 at 114.319 kb on - strand, within ABID97_RS00525 at 114.319 kb on - strand, within ABID97_RS00525 at 114.319 kb on - strand, within ABID97_RS00525 at 114.319 kb on - strand, within ABID97_RS00525 at 114.526 kb on - strand, within ABID97_RS00525 at 114.762 kb on + strand, within ABID97_RS00525 at 114.762 kb on + strand, within ABID97_RS00525 at 114.762 kb on + strand, within ABID97_RS00525 at 114.763 kb on - strand, within ABID97_RS00525 at 114.892 kb on + strand at 114.892 kb on + strand at 114.892 kb on + strand at 114.892 kb on + strand at 114.892 kb on + strand at 114.892 kb on + strand at 114.893 kb on - strand at 114.893 kb on - strand at 114.893 kb on - strand at 114.932 kb on - strand at 115.037 kb on + strand, within ABID97_RS00530 at 115.037 kb on + strand, within ABID97_RS00530 at 115.038 kb on - strand, within ABID97_RS00530 at 115.082 kb on + strand, within ABID97_RS00530 at 115.082 kb on + strand, within ABID97_RS00530 at 115.379 kb on + strand at 115.379 kb on + strand at 115.522 kb on + strand, within ABID97_RS00535 at 115.522 kb on + strand, within ABID97_RS00535 at 115.522 kb on + strand, within ABID97_RS00535 at 115.564 kb on + strand, within ABID97_RS00535 at 115.565 kb on - strand, within ABID97_RS00535 at 115.565 kb on - strand, within ABID97_RS00535 at 115.657 kb on + strand, within ABID97_RS00535 at 115.657 kb on + strand, within ABID97_RS00535 at 115.657 kb on + strand, within ABID97_RS00535 at 115.657 kb on + strand, within ABID97_RS00535 at 115.723 kb on + strand, within ABID97_RS00535 at 115.723 kb on + strand, within ABID97_RS00535 at 115.723 kb on + strand, within ABID97_RS00535 at 115.724 kb on - strand, within ABID97_RS00535 at 115.724 kb on - strand, within ABID97_RS00535
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 113,315 + -0.2 113,576 + ABID97_RS00520 0.39 -2.9 113,576 + ABID97_RS00520 0.39 -0.5 113,576 + ABID97_RS00520 0.39 -0.1 113,577 - ABID97_RS00520 0.40 -0.3 113,577 - ABID97_RS00520 0.40 -0.8 114,029 + -1.3 114,240 + ABID97_RS00525 0.23 -1.2 114,240 + ABID97_RS00525 0.23 -1.4 114,240 + ABID97_RS00525 0.23 -5.1 114,240 + ABID97_RS00525 0.23 -2.6 114,240 + ABID97_RS00525 0.23 +0.1 114,241 - ABID97_RS00525 0.24 -4.2 114,241 - ABID97_RS00525 0.24 -3.1 114,241 - ABID97_RS00525 0.24 -4.0 114,241 - ABID97_RS00525 0.24 -3.6 114,241 - ABID97_RS00525 0.24 -2.5 114,241 - ABID97_RS00525 0.24 -4.4 114,241 - ABID97_RS00525 0.24 -2.4 114,241 - ABID97_RS00525 0.24 -3.4 114,318 + ABID97_RS00525 0.33 -3.3 114,319 - ABID97_RS00525 0.33 -4.7 114,319 - ABID97_RS00525 0.33 -3.9 114,319 - ABID97_RS00525 0.33 -3.4 114,319 - ABID97_RS00525 0.33 -4.0 114,526 - ABID97_RS00525 0.57 -4.4 114,762 + ABID97_RS00525 0.85 -0.9 114,762 + ABID97_RS00525 0.85 -1.9 114,762 + ABID97_RS00525 0.85 -4.6 114,763 - ABID97_RS00525 0.85 -3.6 114,892 + -1.3 114,892 + -0.0 114,892 + -0.3 114,892 + -0.4 114,892 + -0.5 114,892 + -0.7 114,893 - +0.5 114,893 - +0.3 114,893 - -0.6 114,932 - -0.5 115,037 + ABID97_RS00530 0.22 -0.1 115,037 + ABID97_RS00530 0.22 -0.9 115,038 - ABID97_RS00530 0.23 -0.2 115,082 + ABID97_RS00530 0.36 -0.4 115,082 + ABID97_RS00530 0.36 +0.9 115,379 + -0.2 115,379 + +0.5 115,522 + ABID97_RS00535 0.22 +0.1 115,522 + ABID97_RS00535 0.22 -0.0 115,522 + ABID97_RS00535 0.22 -1.1 115,564 + ABID97_RS00535 0.26 -0.0 115,565 - ABID97_RS00535 0.26 +0.4 115,565 - ABID97_RS00535 0.26 +0.1 115,657 + ABID97_RS00535 0.35 -0.8 115,657 + ABID97_RS00535 0.35 -0.0 115,657 + ABID97_RS00535 0.35 -0.9 115,657 + ABID97_RS00535 0.35 -0.1 115,723 + ABID97_RS00535 0.41 -0.6 115,723 + ABID97_RS00535 0.41 +0.6 115,723 + ABID97_RS00535 0.41 -0.2 115,724 - ABID97_RS00535 0.41 +0.0 115,724 - ABID97_RS00535 0.41 -0.0
Or see this region's nucleotide sequence