Experiment: undecene 2.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfhA and yfhG overlap by 11 nucleotides yfhG and yfhK are separated by 164 nucleotides yfhK and glmY are separated by 58 nucleotides glmY and purL are separated by 315 nucleotides
b2554: yfhA - predicted DNA-binding response regulator in two-component system (NCBI), at 2,685,491 to 2,686,825
yfhA
b2555: yfhG - hypothetical protein (NCBI), at 2,686,815 to 2,687,528
yfhG
b2556: yfhK - putative 2-component sensor protein (VIMSS), at 2,687,693 to 2,689,120
yfhK
b4441: glmY - sRNA activator of glmS mRNA (RefSeq), at 2,689,179 to 2,689,362
glmY
b2557: purL - phosphoribosylformylglycinamidine synthase (NCBI), at 2,689,678 to 2,693,565
purL
Position (kb)
2687
2688
2689
2690 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2686.742 kb on - strand at 2686.768 kb on + strand at 2686.846 kb on - strand at 2686.930 kb on - strand, within yfhG at 2686.971 kb on + strand, within yfhG at 2687.022 kb on + strand, within yfhG at 2687.022 kb on + strand, within yfhG at 2687.025 kb on - strand, within yfhG at 2687.025 kb on - strand, within yfhG at 2687.094 kb on - strand, within yfhG at 2687.107 kb on + strand, within yfhG at 2687.280 kb on - strand, within yfhG at 2687.347 kb on + strand, within yfhG at 2687.347 kb on + strand, within yfhG at 2687.435 kb on + strand, within yfhG at 2687.435 kb on + strand, within yfhG at 2687.549 kb on + strand at 2687.577 kb on + strand at 2687.577 kb on + strand at 2687.582 kb on + strand at 2687.582 kb on + strand at 2687.590 kb on - strand at 2687.610 kb on + strand at 2687.641 kb on + strand at 2687.649 kb on - strand at 2687.765 kb on - strand at 2687.765 kb on - strand at 2687.776 kb on + strand at 2687.822 kb on + strand at 2687.933 kb on - strand, within yfhK at 2687.950 kb on - strand, within yfhK at 2687.950 kb on - strand, within yfhK at 2687.974 kb on + strand, within yfhK at 2688.002 kb on - strand, within yfhK at 2688.013 kb on + strand, within yfhK at 2688.021 kb on + strand, within yfhK at 2688.131 kb on - strand, within yfhK at 2688.160 kb on + strand, within yfhK at 2688.168 kb on - strand, within yfhK at 2688.321 kb on - strand, within yfhK at 2688.421 kb on + strand, within yfhK at 2688.467 kb on + strand, within yfhK at 2688.526 kb on + strand, within yfhK at 2688.526 kb on + strand, within yfhK at 2688.566 kb on + strand, within yfhK at 2688.652 kb on + strand, within yfhK at 2688.674 kb on - strand, within yfhK at 2688.707 kb on - strand, within yfhK at 2688.732 kb on - strand, within yfhK at 2688.874 kb on + strand, within yfhK at 2688.874 kb on + strand, within yfhK at 2688.908 kb on + strand, within yfhK at 2688.912 kb on + strand, within yfhK at 2688.914 kb on - strand, within yfhK at 2688.914 kb on - strand, within yfhK at 2688.969 kb on + strand, within yfhK at 2689.027 kb on + strand at 2689.030 kb on - strand at 2689.155 kb on - strand at 2689.169 kb on + strand at 2689.250 kb on + strand, within glmY at 2689.677 kb on - strand at 2689.716 kb on + strand at 2689.716 kb on + strand at 2689.716 kb on + strand at 2689.724 kb on - strand at 2689.838 kb on - strand at 2689.838 kb on - strand at 2689.891 kb on + strand at 2689.959 kb on + strand at 2690.045 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction undecene 2.5 vol% remove 2,686,742 - -2.8 2,686,768 + -1.1 2,686,846 - -0.9 2,686,930 - yfhG b2555 0.16 -0.9 2,686,971 + yfhG b2555 0.22 -0.7 2,687,022 + yfhG b2555 0.29 -1.3 2,687,022 + yfhG b2555 0.29 -2.8 2,687,025 - yfhG b2555 0.29 -0.1 2,687,025 - yfhG b2555 0.29 -1.3 2,687,094 - yfhG b2555 0.39 -1.1 2,687,107 + yfhG b2555 0.41 -0.8 2,687,280 - yfhG b2555 0.65 -0.2 2,687,347 + yfhG b2555 0.75 -1.6 2,687,347 + yfhG b2555 0.75 -0.6 2,687,435 + yfhG b2555 0.87 -2.4 2,687,435 + yfhG b2555 0.87 -1.8 2,687,549 + -1.1 2,687,577 + -0.0 2,687,577 + -0.4 2,687,582 + -0.9 2,687,582 + -0.4 2,687,590 - +0.5 2,687,610 + -0.7 2,687,641 + -1.3 2,687,649 - +0.5 2,687,765 - +1.4 2,687,765 - +0.2 2,687,776 + -1.4 2,687,822 + -0.3 2,687,933 - yfhK b2556 0.17 +0.5 2,687,950 - yfhK b2556 0.18 -0.6 2,687,950 - yfhK b2556 0.18 +0.3 2,687,974 + yfhK b2556 0.20 -1.8 2,688,002 - yfhK b2556 0.22 -0.1 2,688,013 + yfhK b2556 0.22 -1.0 2,688,021 + yfhK b2556 0.23 -1.3 2,688,131 - yfhK b2556 0.31 -2.1 2,688,160 + yfhK b2556 0.33 -1.4 2,688,168 - yfhK b2556 0.33 -0.4 2,688,321 - yfhK b2556 0.44 -0.5 2,688,421 + yfhK b2556 0.51 -1.4 2,688,467 + yfhK b2556 0.54 -2.4 2,688,526 + yfhK b2556 0.58 -0.8 2,688,526 + yfhK b2556 0.58 -0.8 2,688,566 + yfhK b2556 0.61 -1.7 2,688,652 + yfhK b2556 0.67 -1.3 2,688,674 - yfhK b2556 0.69 -0.0 2,688,707 - yfhK b2556 0.71 -0.5 2,688,732 - yfhK b2556 0.73 -0.2 2,688,874 + yfhK b2556 0.83 -1.1 2,688,874 + yfhK b2556 0.83 +0.5 2,688,908 + yfhK b2556 0.85 -1.4 2,688,912 + yfhK b2556 0.85 -2.4 2,688,914 - yfhK b2556 0.86 +1.2 2,688,914 - yfhK b2556 0.86 -2.0 2,688,969 + yfhK b2556 0.89 -1.7 2,689,027 + -2.4 2,689,030 - -1.0 2,689,155 - +0.9 2,689,169 + -1.2 2,689,250 + glmY b4441 0.39 -2.6 2,689,677 - -0.3 2,689,716 + +0.1 2,689,716 + +0.6 2,689,716 + +0.2 2,689,724 - +0.8 2,689,838 - +0.8 2,689,838 - +0.3 2,689,891 + +0.2 2,689,959 + -0.5 2,690,045 + +0.3
Or see this region's nucleotide sequence