Experiment: undecene 2.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yahG and yahI are separated by 421 nucleotides yahI and yahJ are separated by 9 nucleotides
b0321: yahG - hypothetical protein (NCBI), at 337,549 to 338,967
yahG
b0323: yahI - predicted carbamate kinase-like protein (NCBI), at 339,389 to 340,339
yahI
b0324: yahJ - deaminase (NCBI), at 340,349 to 341,731
yahJ
Position (kb) 339
340
341 Strain fitness (log2 ratio) -1
0
1 at 338.424 kb on - strand, within yahG at 338.429 kb on - strand, within yahG at 338.551 kb on - strand, within yahG at 338.656 kb on - strand, within yahG at 338.902 kb on + strand at 338.902 kb on + strand at 339.006 kb on - strand at 339.184 kb on - strand at 339.195 kb on + strand at 339.195 kb on + strand at 339.203 kb on - strand at 339.203 kb on - strand at 339.378 kb on - strand at 339.390 kb on - strand at 339.390 kb on - strand at 339.411 kb on - strand at 339.431 kb on + strand at 339.444 kb on - strand at 339.565 kb on + strand, within yahI at 339.565 kb on + strand, within yahI at 339.630 kb on + strand, within yahI at 339.630 kb on + strand, within yahI at 339.741 kb on - strand, within yahI at 339.798 kb on + strand, within yahI at 339.806 kb on - strand, within yahI at 340.025 kb on + strand, within yahI at 340.025 kb on + strand, within yahI at 340.047 kb on - strand, within yahI at 340.170 kb on - strand, within yahI at 340.174 kb on - strand, within yahI at 340.174 kb on - strand, within yahI at 340.257 kb on + strand at 340.257 kb on + strand at 340.320 kb on + strand at 340.320 kb on + strand at 340.394 kb on + strand at 340.448 kb on + strand at 340.461 kb on + strand at 340.522 kb on - strand, within yahJ at 340.573 kb on - strand, within yahJ at 340.573 kb on - strand, within yahJ at 340.675 kb on + strand, within yahJ at 340.675 kb on + strand, within yahJ at 340.776 kb on + strand, within yahJ at 340.952 kb on + strand, within yahJ at 341.087 kb on - strand, within yahJ at 341.087 kb on - strand, within yahJ at 341.124 kb on + strand, within yahJ at 341.139 kb on - strand, within yahJ at 341.141 kb on + strand, within yahJ
Per-strain Table
Position Strand Gene LocusTag Fraction undecene 2.5 vol% remove 338,424 - yahG b0321 0.62 +0.9 338,429 - yahG b0321 0.62 -0.3 338,551 - yahG b0321 0.71 -0.1 338,656 - yahG b0321 0.78 +0.6 338,902 + -0.9 338,902 + +1.0 339,006 - +0.2 339,184 - -1.1 339,195 + -0.5 339,195 + +0.0 339,203 - -0.2 339,203 - -1.0 339,378 - +0.2 339,390 - +0.7 339,390 - +0.6 339,411 - +0.2 339,431 + -0.4 339,444 - -0.9 339,565 + yahI b0323 0.19 +0.0 339,565 + yahI b0323 0.19 +0.1 339,630 + yahI b0323 0.25 +0.3 339,630 + yahI b0323 0.25 -0.3 339,741 - yahI b0323 0.37 -1.2 339,798 + yahI b0323 0.43 -0.4 339,806 - yahI b0323 0.44 -0.3 340,025 + yahI b0323 0.67 -0.7 340,025 + yahI b0323 0.67 -0.5 340,047 - yahI b0323 0.69 -0.2 340,170 - yahI b0323 0.82 -0.4 340,174 - yahI b0323 0.83 +0.7 340,174 - yahI b0323 0.83 -0.6 340,257 + -0.7 340,257 + +0.5 340,320 + -1.1 340,320 + -0.1 340,394 + -0.5 340,448 + +0.3 340,461 + -0.3 340,522 - yahJ b0324 0.13 +0.0 340,573 - yahJ b0324 0.16 -0.6 340,573 - yahJ b0324 0.16 +0.2 340,675 + yahJ b0324 0.24 -0.6 340,675 + yahJ b0324 0.24 -0.6 340,776 + yahJ b0324 0.31 -0.8 340,952 + yahJ b0324 0.44 +0.0 341,087 - yahJ b0324 0.53 +0.1 341,087 - yahJ b0324 0.53 -0.2 341,124 + yahJ b0324 0.56 -0.8 341,139 - yahJ b0324 0.57 +1.6 341,141 + yahJ b0324 0.57 +0.5
Or see this region's nucleotide sequence