Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4819

Experiment: LB_plus_SM_buffer with 6F2_phage 1.875 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4817 and GFF4818 are separated by 87 nucleotidesGFF4818 and GFF4819 are separated by 75 nucleotidesGFF4819 and GFF4820 overlap by 1 nucleotides GFF4817 - Secreted protein, at 116,985 to 118,067 GFF4817 GFF4818 - Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8), at 118,155 to 118,889 GFF4818 GFF4819 - Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2), at 118,965 to 120,677 GFF4819 GFF4820 - Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2), at 120,677 to 122,476 GFF4820 Position (kb) 118 119 120 121Strain fitness (log2 ratio) -2 -1 0 1 2at 117.999 kb on + strandat 118.131 kb on + strandat 118.131 kb on + strandat 118.139 kb on + strandat 119.721 kb on - strand, within GFF4819at 119.892 kb on - strand, within GFF4819at 119.892 kb on - strand, within GFF4819at 120.167 kb on - strand, within GFF4819at 120.194 kb on - strand, within GFF4819at 120.206 kb on + strand, within GFF4819at 120.219 kb on - strand, within GFF4819at 120.505 kb on + strand, within GFF4819at 120.599 kb on - strandat 120.638 kb on + strandat 120.707 kb on + strandat 120.722 kb on + strandat 120.828 kb on + strandat 120.829 kb on - strandat 120.829 kb on - strandat 120.832 kb on + strandat 120.897 kb on + strand, within GFF4820at 120.964 kb on - strand, within GFF4820at 121.033 kb on + strand, within GFF4820at 121.270 kb on + strand, within GFF4820at 121.315 kb on - strand, within GFF4820at 121.416 kb on + strand, within GFF4820at 121.445 kb on + strand, within GFF4820

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 1.875 MOI
remove
117,999 + -0.7
118,131 + +0.4
118,131 + -0.1
118,139 + -0.5
119,721 - GFF4819 0.44 -0.5
119,892 - GFF4819 0.54 -0.7
119,892 - GFF4819 0.54 -0.6
120,167 - GFF4819 0.70 -0.5
120,194 - GFF4819 0.72 -0.0
120,206 + GFF4819 0.72 +0.1
120,219 - GFF4819 0.73 -1.2
120,505 + GFF4819 0.90 +2.5
120,599 - +0.2
120,638 + -0.5
120,707 + -0.7
120,722 + +0.7
120,828 + +0.1
120,829 - -0.2
120,829 - +0.3
120,832 + -0.5
120,897 + GFF4820 0.12 +0.7
120,964 - GFF4820 0.16 -0.6
121,033 + GFF4820 0.20 -1.2
121,270 + GFF4820 0.33 -0.1
121,315 - GFF4820 0.35 +1.9
121,416 + GFF4820 0.41 -1.9
121,445 + GFF4820 0.43 -0.5

Or see this region's nucleotide sequence