Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4808

Experiment: LB_plus_SM_buffer with 6F2_phage 1.875 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4806 and GFF4807 are separated by 4 nucleotidesGFF4807 and GFF4808 are separated by 91 nucleotidesGFF4808 and GFF4809 overlap by 1 nucleotidesGFF4809 and GFF4810 overlap by 4 nucleotides GFF4806 - FIG01045727: hypothetical protein, at 107,266 to 107,457 GFF4806 GFF4807 - CRISPR associated protein of unknown function, at 107,462 to 108,118 GFF4807 GFF4808 - CRISPR-associated protein, Cas2, at 108,210 to 108,503 GFF4808 GFF4809 - CRISPR-associated protein Cas1, at 108,503 to 109,423 GFF4809 GFF4810 - CRISPR-associated protein, Cse3 family, at 109,420 to 110,070 GFF4810 Position (kb) 108 109Strain fitness (log2 ratio) -3 -2 -1 0 1at 107.212 kb on + strandat 107.212 kb on + strandat 107.213 kb on - strandat 107.324 kb on + strand, within GFF4806at 107.400 kb on + strand, within GFF4806at 108.066 kb on + strandat 108.127 kb on - strandat 108.127 kb on - strandat 108.269 kb on + strand, within GFF4808at 108.269 kb on + strand, within GFF4808at 108.314 kb on + strand, within GFF4808at 108.413 kb on - strand, within GFF4808at 108.471 kb on + strand, within GFF4808at 108.498 kb on - strandat 108.498 kb on - strandat 108.806 kb on - strand, within GFF4809at 108.886 kb on + strand, within GFF4809at 108.886 kb on + strand, within GFF4809at 108.886 kb on + strand, within GFF4809at 108.887 kb on - strand, within GFF4809at 108.887 kb on - strand, within GFF4809at 108.930 kb on + strand, within GFF4809at 108.930 kb on + strand, within GFF4809at 108.931 kb on - strand, within GFF4809at 108.934 kb on + strand, within GFF4809at 108.978 kb on + strand, within GFF4809at 109.006 kb on + strand, within GFF4809at 109.271 kb on - strand, within GFF4809at 109.271 kb on - strand, within GFF4809at 109.295 kb on - strand, within GFF4809at 109.359 kb on + strandat 109.383 kb on - strandat 109.477 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 1.875 MOI
remove
107,212 + -0.4
107,212 + -0.6
107,213 - +0.3
107,324 + GFF4806 0.30 -0.6
107,400 + GFF4806 0.70 -0.5
108,066 + -0.7
108,127 - +0.0
108,127 - +0.2
108,269 + GFF4808 0.20 +0.3
108,269 + GFF4808 0.20 +0.9
108,314 + GFF4808 0.35 +0.2
108,413 - GFF4808 0.69 +0.4
108,471 + GFF4808 0.89 +0.1
108,498 - -0.3
108,498 - -0.4
108,806 - GFF4809 0.33 +0.2
108,886 + GFF4809 0.42 -0.1
108,886 + GFF4809 0.42 -1.1
108,886 + GFF4809 0.42 -0.3
108,887 - GFF4809 0.42 +0.0
108,887 - GFF4809 0.42 -0.7
108,930 + GFF4809 0.46 -2.8
108,930 + GFF4809 0.46 +0.3
108,931 - GFF4809 0.46 -0.2
108,934 + GFF4809 0.47 -0.2
108,978 + GFF4809 0.52 +0.1
109,006 + GFF4809 0.55 +0.1
109,271 - GFF4809 0.83 -0.4
109,271 - GFF4809 0.83 +1.4
109,295 - GFF4809 0.86 -0.7
109,359 + -0.0
109,383 - +1.3
109,477 - -0.5

Or see this region's nucleotide sequence