Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4622

Experiment: LB_plus_SM_buffer with 6F2_phage 1.875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4620 and GFF4621 are separated by 648 nucleotidesGFF4621 and GFF4622 are separated by 43 nucleotidesGFF4622 and GFF4623 are separated by 285 nucleotides GFF4620 - Probable DNA recombinase, at 412,172 to 412,738 GFF4620 GFF4621 - putative inner membrane protein, at 413,387 to 413,533 GFF4621 GFF4622 - FIG074102: hypothetical protein, at 413,577 to 414,275 GFF4622 GFF4623 - UDP-galactopyranose mutase (EC 5.4.99.9), at 414,561 to 415,712 GFF4623 Position (kb) 413 414 415Strain fitness (log2 ratio) -1 0 1at 412.577 kb on - strand, within GFF4620at 412.577 kb on - strand, within GFF4620at 412.625 kb on - strand, within GFF4620at 412.635 kb on + strand, within GFF4620at 412.636 kb on - strand, within GFF4620at 412.636 kb on - strand, within GFF4620at 412.643 kb on + strand, within GFF4620at 412.690 kb on + strandat 412.743 kb on - strandat 413.175 kb on - strandat 413.434 kb on + strand, within GFF4621at 413.434 kb on + strand, within GFF4621at 413.554 kb on + strandat 413.711 kb on - strand, within GFF4622at 413.795 kb on + strand, within GFF4622at 413.932 kb on - strand, within GFF4622at 414.007 kb on + strand, within GFF4622at 414.007 kb on + strand, within GFF4622at 414.173 kb on - strand, within GFF4622at 414.286 kb on - strandat 414.643 kb on + strandat 415.003 kb on - strand, within GFF4623at 415.003 kb on - strand, within GFF4623at 415.025 kb on + strand, within GFF4623

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 1.875 MOI
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412,577 - GFF4620 0.71 +0.1
412,577 - GFF4620 0.71 -0.2
412,625 - GFF4620 0.80 +0.4
412,635 + GFF4620 0.82 -0.6
412,636 - GFF4620 0.82 -0.2
412,636 - GFF4620 0.82 -0.4
412,643 + GFF4620 0.83 -0.2
412,690 + -0.3
412,743 - +0.9
413,175 - -0.0
413,434 + GFF4621 0.32 +0.4
413,434 + GFF4621 0.32 -0.2
413,554 + -0.9
413,711 - GFF4622 0.19 -0.8
413,795 + GFF4622 0.31 -0.4
413,932 - GFF4622 0.51 +0.2
414,007 + GFF4622 0.62 -0.3
414,007 + GFF4622 0.62 -1.0
414,173 - GFF4622 0.85 +0.0
414,286 - +0.2
414,643 + +0.4
415,003 - GFF4623 0.38 +0.3
415,003 - GFF4623 0.38 +0.7
415,025 + GFF4623 0.40 +0.2

Or see this region's nucleotide sequence