Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3829

Experiment: LB_plus_SM_buffer with 6F2_phage 1.875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3827 and GFF3828 are separated by 55 nucleotidesGFF3828 and GFF3829 are separated by 13 nucleotidesGFF3829 and GFF3830 are separated by 15 nucleotides GFF3827 - probable fimbrial chain protein stcA, at 97,225 to 97,755 GFF3827 GFF3828 - Uncharacterized fimbrial chaperone YehC precursor, at 97,811 to 98,494 GFF3828 GFF3829 - Fimbriae usher protein StcC, at 98,508 to 100,997 GFF3829 GFF3830 - Uncharacterized protein YehA precursor, at 101,013 to 102,020 GFF3830 Position (kb) 98 99 100 101Strain fitness (log2 ratio) -2 -1 0 1at 98.214 kb on + strand, within GFF3828at 98.456 kb on - strandat 98.917 kb on + strand, within GFF3829at 98.941 kb on + strand, within GFF3829at 98.941 kb on + strand, within GFF3829at 98.989 kb on - strand, within GFF3829at 99.006 kb on + strand, within GFF3829at 99.007 kb on - strand, within GFF3829at 99.191 kb on - strand, within GFF3829at 99.208 kb on - strand, within GFF3829at 99.210 kb on - strand, within GFF3829at 99.477 kb on - strand, within GFF3829at 99.531 kb on - strand, within GFF3829at 99.740 kb on + strand, within GFF3829at 99.790 kb on - strand, within GFF3829at 99.792 kb on - strand, within GFF3829at 99.837 kb on + strand, within GFF3829at 100.022 kb on - strand, within GFF3829at 100.118 kb on + strand, within GFF3829at 100.214 kb on + strand, within GFF3829at 100.426 kb on - strand, within GFF3829at 100.625 kb on + strand, within GFF3829at 101.398 kb on + strand, within GFF3830

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 1.875 MOI
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98,214 + GFF3828 0.59 +0.1
98,456 - +0.3
98,917 + GFF3829 0.16 +0.8
98,941 + GFF3829 0.17 +0.3
98,941 + GFF3829 0.17 -0.1
98,989 - GFF3829 0.19 +0.2
99,006 + GFF3829 0.20 -1.1
99,007 - GFF3829 0.20 -0.1
99,191 - GFF3829 0.27 +0.7
99,208 - GFF3829 0.28 -0.5
99,210 - GFF3829 0.28 +0.3
99,477 - GFF3829 0.39 +0.6
99,531 - GFF3829 0.41 -2.3
99,740 + GFF3829 0.49 -0.7
99,790 - GFF3829 0.51 -0.4
99,792 - GFF3829 0.52 +0.0
99,837 + GFF3829 0.53 +0.2
100,022 - GFF3829 0.61 -0.4
100,118 + GFF3829 0.65 -0.5
100,214 + GFF3829 0.69 -0.7
100,426 - GFF3829 0.77 -0.5
100,625 + GFF3829 0.85 -2.3
101,398 + GFF3830 0.38 -1.3

Or see this region's nucleotide sequence