Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3650

Experiment: LB_plus_SM_buffer with 6F2_phage 1.875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3612 and GFF3649 are separated by 157 nucleotidesGFF3649 and GFF3650 are separated by 10 nucleotidesGFF3650 and GFF3613 are separated by 151 nucleotides GFF3612 - Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components), at 362,484 to 363,542 GFF3612 GFF3649 - tRNA-Val-GAC, at 363,700 to 363,776 GFF3649 GFF3650 - tRNA-Val-GAC, at 363,787 to 363,863 GFF3650 GFF3613 - Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps, at 364,015 to 365,388 GFF3613 Position (kb) 363 364Strain fitness (log2 ratio) -2 -1 0 1at 363.259 kb on + strand, within GFF3612at 363.362 kb on + strand, within GFF3612at 363.597 kb on - strandat 363.647 kb on - strandat 363.856 kb on - strandat 364.014 kb on - strandat 364.061 kb on - strandat 364.061 kb on - strandat 364.179 kb on - strand, within GFF3613at 364.245 kb on + strand, within GFF3613at 364.279 kb on + strand, within GFF3613at 364.319 kb on - strand, within GFF3613at 364.319 kb on - strand, within GFF3613at 364.359 kb on - strand, within GFF3613at 364.371 kb on + strand, within GFF3613at 364.416 kb on + strand, within GFF3613at 364.752 kb on + strand, within GFF3613

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 1.875 MOI
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363,259 + GFF3612 0.73 -0.7
363,362 + GFF3612 0.83 -0.2
363,597 - +0.8
363,647 - +1.2
363,856 - -0.1
364,014 - -0.2
364,061 - +0.0
364,061 - -0.5
364,179 - GFF3613 0.12 -0.8
364,245 + GFF3613 0.17 -0.4
364,279 + GFF3613 0.19 +0.1
364,319 - GFF3613 0.22 +0.5
364,319 - GFF3613 0.22 +1.1
364,359 - GFF3613 0.25 +0.3
364,371 + GFF3613 0.26 +1.2
364,416 + GFF3613 0.29 -2.4
364,752 + GFF3613 0.54 +0.2

Or see this region's nucleotide sequence