Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3610

Experiment: LB_plus_SM_buffer with 6F2_phage 1.875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3608 and GFF3609 are separated by 67 nucleotidesGFF3609 and GFF3610 are separated by 149 nucleotidesGFF3610 and GFF3611 are separated by 0 nucleotidesGFF3611 and GFF3612 overlap by 4 nucleotides GFF3608 - Type III secretion inner membrane protein (YscQ,homologous to flagellar export components), at 359,761 to 360,729 GFF3608 GFF3609 - Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components), at 360,797 to 361,444 GFF3609 GFF3610 - Type III secretion inner membrane protein (YscS,homologous to flagellar export components), at 361,594 to 361,707 GFF3610 GFF3611 - Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components), at 361,708 to 362,487 GFF3611 GFF3612 - Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components), at 362,484 to 363,542 GFF3612 Position (kb) 361 362Strain fitness (log2 ratio) -1 0 1at 360.597 kb on - strand, within GFF3608

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 1.875 MOI
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360,597 - GFF3608 0.86 +1.0

Or see this region's nucleotide sequence