Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2748

Experiment: LB_plus_SM_buffer with 6F2_phage 1.875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2746 and GFF2747 are separated by 358 nucleotidesGFF2747 and GFF2748 are separated by 265 nucleotidesGFF2748 and GFF2749 are separated by 476 nucleotides GFF2746 - Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1), at 265,226 to 266,857 GFF2746 GFF2747 - hypothetical protein, at 267,216 to 267,356 GFF2747 GFF2748 - Putative membrane protein, at 267,622 to 268,269 GFF2748 GFF2749 - Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10), at 268,746 to 271,424 GFF2749 Position (kb) 267 268 269Strain fitness (log2 ratio) -1 0 1 2at 266.636 kb on + strand, within GFF2746at 266.728 kb on + strandat 266.729 kb on - strandat 266.729 kb on - strandat 266.851 kb on + strandat 266.881 kb on - strandat 266.881 kb on - strandat 266.907 kb on - strandat 266.943 kb on - strandat 266.970 kb on - strandat 267.026 kb on + strandat 267.071 kb on - strandat 267.415 kb on + strandat 267.551 kb on + strandat 267.561 kb on + strandat 267.589 kb on + strandat 267.624 kb on - strandat 268.050 kb on + strand, within GFF2748at 268.352 kb on - strandat 268.363 kb on + strandat 268.364 kb on - strandat 268.368 kb on - strandat 268.401 kb on - strandat 268.406 kb on + strandat 268.463 kb on - strandat 268.514 kb on + strandat 268.583 kb on - strandat 268.970 kb on + strandat 268.974 kb on + strandat 268.985 kb on + strandat 268.985 kb on + strandat 269.269 kb on + strand, within GFF2749

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 1.875 MOI
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266,636 + GFF2746 0.86 -0.0
266,728 + +0.5
266,729 - +1.8
266,729 - +0.7
266,851 + +0.5
266,881 - +0.8
266,881 - -0.6
266,907 - +0.2
266,943 - +0.6
266,970 - -0.1
267,026 + -0.1
267,071 - +0.5
267,415 + +0.5
267,551 + -0.7
267,561 + -0.7
267,589 + +0.1
267,624 - +0.2
268,050 + GFF2748 0.66 +0.3
268,352 - +0.4
268,363 + +0.5
268,364 - +0.4
268,368 - +0.3
268,401 - -0.0
268,406 + +0.5
268,463 - +0.0
268,514 + -0.5
268,583 - +0.0
268,970 + +0.3
268,974 + +0.7
268,985 + +0.8
268,985 + -0.3
269,269 + GFF2749 0.20 +0.8

Or see this region's nucleotide sequence