Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2730

Experiment: LB_plus_SM_buffer with 6F2_phage 1.875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2728 and GFF2729 are separated by 73 nucleotidesGFF2729 and GFF2730 are separated by 19 nucleotidesGFF2730 and GFF2731 are separated by 81 nucleotides GFF2728 - Protein yciF, at 251,448 to 251,951 GFF2728 GFF2729 - Protein YciE, at 252,025 to 252,531 GFF2729 GFF2730 - Manganese catalase (EC 1.11.1.6), at 252,551 to 253,429 GFF2730 GFF2731 - Outer membrane protein W precursor, at 253,511 to 254,149 GFF2731 Position (kb) 252 253 254Strain fitness (log2 ratio) -1 0 1 2at 252.033 kb on + strandat 252.159 kb on + strand, within GFF2729at 252.578 kb on + strandat 252.580 kb on + strandat 252.602 kb on - strandat 252.871 kb on + strand, within GFF2730at 252.947 kb on + strand, within GFF2730at 252.950 kb on - strand, within GFF2730at 252.955 kb on + strand, within GFF2730at 253.178 kb on + strand, within GFF2730at 253.193 kb on + strand, within GFF2730at 253.193 kb on + strand, within GFF2730at 253.441 kb on + strandat 253.770 kb on + strand, within GFF2731at 253.825 kb on - strand, within GFF2731at 253.954 kb on - strand, within GFF2731at 254.004 kb on - strand, within GFF2731at 254.035 kb on + strand, within GFF2731at 254.066 kb on - strand, within GFF2731at 254.320 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 1.875 MOI
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252,033 + -0.0
252,159 + GFF2729 0.26 +0.7
252,578 + -0.5
252,580 + +0.5
252,602 - +0.5
252,871 + GFF2730 0.36 +0.3
252,947 + GFF2730 0.45 -0.7
252,950 - GFF2730 0.45 +0.2
252,955 + GFF2730 0.46 +0.1
253,178 + GFF2730 0.71 +0.5
253,193 + GFF2730 0.73 +0.5
253,193 + GFF2730 0.73 +2.2
253,441 + +0.5
253,770 + GFF2731 0.41 +0.7
253,825 - GFF2731 0.49 -0.1
253,954 - GFF2731 0.69 +1.1
254,004 - GFF2731 0.77 -0.0
254,035 + GFF2731 0.82 -0.2
254,066 - GFF2731 0.87 +1.3
254,320 + +1.3

Or see this region's nucleotide sequence