Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2566

Experiment: LB_plus_SM_buffer with 6F2_phage 1.875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2565 and GFF2566 are separated by 117 nucleotidesGFF2566 and GFF2567 are separated by 364 nucleotides GFF2565 - Methyl viologen resistance protein smvA, at 82,427 to 83,914 GFF2565 GFF2566 - Transcriptional regulator, TetR family, at 84,032 to 84,610 GFF2566 GFF2567 - Nitrate/nitrite transporter, at 84,975 to 86,213 GFF2567 Position (kb) 84 85Strain fitness (log2 ratio) -2 -1 0 1 2at 83.150 kb on + strand, within GFF2565at 83.450 kb on + strand, within GFF2565at 83.453 kb on + strand, within GFF2565at 83.457 kb on - strand, within GFF2565at 83.771 kb on - strandat 83.870 kb on - strandat 83.871 kb on + strandat 83.885 kb on - strandat 83.892 kb on - strandat 84.038 kb on + strandat 84.384 kb on - strand, within GFF2566at 84.384 kb on - strand, within GFF2566at 84.523 kb on + strand, within GFF2566at 84.523 kb on + strand, within GFF2566at 84.524 kb on - strand, within GFF2566at 84.527 kb on + strand, within GFF2566at 84.527 kb on + strand, within GFF2566at 84.528 kb on - strand, within GFF2566at 84.531 kb on + strand, within GFF2566at 84.804 kb on + strandat 84.804 kb on + strandat 85.049 kb on - strandat 85.057 kb on + strandat 85.082 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 1.875 MOI
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83,150 + GFF2565 0.49 -0.9
83,450 + GFF2565 0.69 -0.8
83,453 + GFF2565 0.69 +0.7
83,457 - GFF2565 0.69 +1.0
83,771 - +1.2
83,870 - +0.3
83,871 + -0.5
83,885 - +0.3
83,892 - +0.1
84,038 + +0.1
84,384 - GFF2566 0.61 -2.1
84,384 - GFF2566 0.61 +0.0
84,523 + GFF2566 0.85 -0.0
84,523 + GFF2566 0.85 -0.1
84,524 - GFF2566 0.85 -0.8
84,527 + GFF2566 0.85 +0.4
84,527 + GFF2566 0.85 +0.8
84,528 - GFF2566 0.86 -0.1
84,531 + GFF2566 0.86 -0.3
84,804 + +0.4
84,804 + -0.6
85,049 - -0.2
85,057 + +2.6
85,082 - -0.0

Or see this region's nucleotide sequence