Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2341

Experiment: LB_plus_SM_buffer with 6F2_phage 1.875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2340 and GFF2341 are separated by 160 nucleotidesGFF2341 and GFF2342 are separated by 210 nucleotides GFF2339 - PTS system fructose-like IIB component 2 precursor (EC 2.7.1.69), at 130,881 to 131,234 GFF2339 GFF2340 - Transcriptional regulator, AraC family, at 131,221 to 132,072 GFF2340 GFF2341 - UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide, at 132,233 to 133,966 GFF2341 GFF2342 - Phosphoenolpyruvate carboxylase (EC 4.1.1.31), at 134,177 to 136,828 GFF2342 Position (kb) 132 133 134Strain fitness (log2 ratio) -1 0 1 2 3 4at 131.295 kb on + strandat 131.296 kb on - strandat 131.322 kb on - strand, within GFF2340at 131.326 kb on - strand, within GFF2340at 131.326 kb on - strand, within GFF2340at 131.326 kb on - strand, within GFF2340at 131.412 kb on + strand, within GFF2340at 131.485 kb on - strand, within GFF2340at 131.487 kb on - strand, within GFF2340at 131.623 kb on + strand, within GFF2340at 131.624 kb on - strand, within GFF2340at 131.627 kb on - strand, within GFF2340at 131.685 kb on + strand, within GFF2340at 131.685 kb on + strand, within GFF2340at 131.792 kb on - strand, within GFF2340at 132.068 kb on + strandat 132.068 kb on + strandat 132.068 kb on + strandat 132.069 kb on - strandat 132.069 kb on - strandat 132.227 kb on + strandat 132.227 kb on + strandat 132.227 kb on + strandat 132.228 kb on - strandat 132.234 kb on + strandat 132.259 kb on - strandat 132.259 kb on - strandat 132.268 kb on + strandat 132.269 kb on - strandat 132.269 kb on - strandat 132.269 kb on - strandat 132.274 kb on - strandat 132.274 kb on - strandat 132.297 kb on + strandat 132.372 kb on + strandat 132.372 kb on + strandat 132.372 kb on + strandat 132.386 kb on + strandat 132.424 kb on - strand, within GFF2341at 132.424 kb on - strand, within GFF2341at 132.505 kb on + strand, within GFF2341at 132.508 kb on - strand, within GFF2341at 132.508 kb on - strand, within GFF2341at 132.508 kb on - strand, within GFF2341at 132.508 kb on - strand, within GFF2341at 132.508 kb on - strand, within GFF2341at 132.508 kb on - strand, within GFF2341at 132.508 kb on - strand, within GFF2341at 132.508 kb on - strand, within GFF2341at 132.511 kb on + strand, within GFF2341at 132.511 kb on + strand, within GFF2341at 132.512 kb on - strand, within GFF2341at 132.512 kb on - strand, within GFF2341at 132.568 kb on - strand, within GFF2341at 132.568 kb on - strand, within GFF2341at 132.627 kb on + strand, within GFF2341at 132.628 kb on - strand, within GFF2341at 132.654 kb on + strand, within GFF2341at 132.681 kb on + strand, within GFF2341at 132.691 kb on - strand, within GFF2341at 132.713 kb on + strand, within GFF2341at 132.714 kb on - strand, within GFF2341at 132.714 kb on - strand, within GFF2341at 132.780 kb on + strand, within GFF2341at 132.780 kb on + strand, within GFF2341at 132.781 kb on - strand, within GFF2341at 132.912 kb on + strand, within GFF2341at 133.001 kb on - strand, within GFF2341at 133.022 kb on - strand, within GFF2341at 133.107 kb on + strand, within GFF2341at 133.107 kb on + strand, within GFF2341at 133.130 kb on - strand, within GFF2341at 133.204 kb on - strand, within GFF2341at 133.214 kb on - strand, within GFF2341at 133.360 kb on - strand, within GFF2341at 133.369 kb on + strand, within GFF2341at 133.372 kb on + strand, within GFF2341at 133.438 kb on + strand, within GFF2341at 133.438 kb on + strand, within GFF2341at 133.439 kb on - strand, within GFF2341at 133.439 kb on - strand, within GFF2341at 133.439 kb on - strand, within GFF2341at 133.439 kb on - strand, within GFF2341at 133.447 kb on + strand, within GFF2341at 133.485 kb on + strand, within GFF2341at 133.529 kb on - strand, within GFF2341at 133.531 kb on - strand, within GFF2341at 133.576 kb on - strand, within GFF2341at 133.576 kb on - strand, within GFF2341at 133.611 kb on + strand, within GFF2341at 133.623 kb on + strand, within GFF2341at 133.697 kb on + strand, within GFF2341at 133.701 kb on + strand, within GFF2341at 133.702 kb on - strand, within GFF2341at 133.704 kb on + strand, within GFF2341at 133.704 kb on + strand, within GFF2341at 133.705 kb on - strand, within GFF2341at 133.705 kb on - strand, within GFF2341at 133.812 kb on + strandat 133.818 kb on - strandat 133.860 kb on + strandat 133.865 kb on - strandat 133.899 kb on + strandat 133.942 kb on + strandat 133.952 kb on + strandat 133.953 kb on - strandat 133.966 kb on + strandat 134.127 kb on + strandat 134.127 kb on + strandat 134.127 kb on + strandat 134.127 kb on + strandat 134.128 kb on - strandat 134.148 kb on - strandat 134.148 kb on - strandat 134.148 kb on - strandat 134.326 kb on - strandat 134.410 kb on + strandat 134.411 kb on - strandat 134.860 kb on + strand, within GFF2342at 134.861 kb on - strand, within GFF2342at 134.864 kb on - strand, within GFF2342

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 1.875 MOI
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131,295 + -0.2
131,296 - -0.6
131,322 - GFF2340 0.12 -0.0
131,326 - GFF2340 0.12 +0.7
131,326 - GFF2340 0.12 +0.1
131,326 - GFF2340 0.12 +1.4
131,412 + GFF2340 0.22 +0.6
131,485 - GFF2340 0.31 +0.0
131,487 - GFF2340 0.31 +0.1
131,623 + GFF2340 0.47 -0.3
131,624 - GFF2340 0.47 -0.3
131,627 - GFF2340 0.48 -0.2
131,685 + GFF2340 0.54 -0.1
131,685 + GFF2340 0.54 -0.1
131,792 - GFF2340 0.67 -0.2
132,068 + +0.1
132,068 + +0.1
132,068 + +0.3
132,069 - -0.8
132,069 - -0.0
132,227 + +1.3
132,227 + -0.8
132,227 + +0.2
132,228 - +0.0
132,234 + +0.1
132,259 - -0.0
132,259 - +0.5
132,268 + +0.0
132,269 - -0.7
132,269 - +0.5
132,269 - +0.4
132,274 - +0.7
132,274 - +0.3
132,297 + +1.0
132,372 + +0.5
132,372 + +0.3
132,372 + -0.1
132,386 + +1.5
132,424 - GFF2341 0.11 +0.1
132,424 - GFF2341 0.11 -0.1
132,505 + GFF2341 0.16 +0.1
132,508 - GFF2341 0.16 -0.5
132,508 - GFF2341 0.16 +0.8
132,508 - GFF2341 0.16 -0.1
132,508 - GFF2341 0.16 +0.6
132,508 - GFF2341 0.16 +0.8
132,508 - GFF2341 0.16 -0.9
132,508 - GFF2341 0.16 -0.8
132,508 - GFF2341 0.16 +4.7
132,511 + GFF2341 0.16 +0.8
132,511 + GFF2341 0.16 +0.2
132,512 - GFF2341 0.16 +1.3
132,512 - GFF2341 0.16 +0.4
132,568 - GFF2341 0.19 +0.5
132,568 - GFF2341 0.19 +2.5
132,627 + GFF2341 0.23 +0.7
132,628 - GFF2341 0.23 -1.2
132,654 + GFF2341 0.24 +0.3
132,681 + GFF2341 0.26 -1.7
132,691 - GFF2341 0.26 -0.5
132,713 + GFF2341 0.28 +0.2
132,714 - GFF2341 0.28 -1.2
132,714 - GFF2341 0.28 -0.3
132,780 + GFF2341 0.32 +0.3
132,780 + GFF2341 0.32 +0.6
132,781 - GFF2341 0.32 +0.5
132,912 + GFF2341 0.39 -0.3
133,001 - GFF2341 0.44 -0.2
133,022 - GFF2341 0.46 +0.4
133,107 + GFF2341 0.50 +0.2
133,107 + GFF2341 0.50 +0.8
133,130 - GFF2341 0.52 +0.0
133,204 - GFF2341 0.56 -0.9
133,214 - GFF2341 0.57 -0.5
133,360 - GFF2341 0.65 +1.0
133,369 + GFF2341 0.66 +0.3
133,372 + GFF2341 0.66 +1.5
133,438 + GFF2341 0.69 +1.1
133,438 + GFF2341 0.69 +0.6
133,439 - GFF2341 0.70 -0.6
133,439 - GFF2341 0.70 +0.5
133,439 - GFF2341 0.70 +0.6
133,439 - GFF2341 0.70 -0.1
133,447 + GFF2341 0.70 +0.7
133,485 + GFF2341 0.72 +1.2
133,529 - GFF2341 0.75 +0.5
133,531 - GFF2341 0.75 +0.3
133,576 - GFF2341 0.77 +0.7
133,576 - GFF2341 0.77 +0.2
133,611 + GFF2341 0.79 +0.3
133,623 + GFF2341 0.80 +0.3
133,697 + GFF2341 0.84 +0.4
133,701 + GFF2341 0.85 -0.1
133,702 - GFF2341 0.85 +0.2
133,704 + GFF2341 0.85 +0.6
133,704 + GFF2341 0.85 +0.6
133,705 - GFF2341 0.85 +0.2
133,705 - GFF2341 0.85 -0.5
133,812 + +0.7
133,818 - -0.5
133,860 + +0.5
133,865 - +0.3
133,899 + -0.1
133,942 + +0.1
133,952 + -0.3
133,953 - -0.7
133,966 + +0.4
134,127 + -1.0
134,127 + +0.6
134,127 + +0.1
134,127 + +0.4
134,128 - +0.2
134,148 - -0.1
134,148 - -0.5
134,148 - +0.1
134,326 - +0.4
134,410 + -0.5
134,411 - +0.3
134,860 + GFF2342 0.26 +0.2
134,861 - GFF2342 0.26 -1.2
134,864 - GFF2342 0.26 -0.1

Or see this region's nucleotide sequence