Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF215

Experiment: LB_plus_SM_buffer with 6F2_phage 1.875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF214 and GFF215 are separated by 640 nucleotidesGFF215 and GFF216 are separated by 125 nucleotides GFF214 - Carbamoyl-phosphate synthase small chain (EC 6.3.5.5), at 212,062 to 213,210 GFF214 GFF215 - FIG01046809: hypothetical protein, at 213,851 to 214,126 GFF215 GFF216 - 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8), at 214,252 to 215,073 GFF216 Position (kb) 213 214 215Strain fitness (log2 ratio) -1 0 1at 213.045 kb on + strand, within GFF214at 213.045 kb on + strand, within GFF214at 213.045 kb on + strand, within GFF214at 213.045 kb on + strand, within GFF214at 213.045 kb on + strand, within GFF214at 213.046 kb on - strand, within GFF214at 213.046 kb on - strand, within GFF214at 213.961 kb on - strand, within GFF215at 213.961 kb on - strand, within GFF215at 214.243 kb on - strandat 214.243 kb on - strandat 214.246 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 1.875 MOI
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213,045 + GFF214 0.86 -0.5
213,045 + GFF214 0.86 -0.7
213,045 + GFF214 0.86 -0.4
213,045 + GFF214 0.86 -0.7
213,045 + GFF214 0.86 -0.3
213,046 - GFF214 0.86 -0.1
213,046 - GFF214 0.86 -0.9
213,961 - GFF215 0.40 -0.5
213,961 - GFF215 0.40 -1.0
214,243 - +0.4
214,243 - -1.0
214,246 + -0.6

Or see this region's nucleotide sequence