Experiment: LB_plus_SM_buffer with 6F2_phage 1.875 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1569 and GFF1570 are separated by 21 nucleotides GFF1570 and GFF1571 are separated by 99 nucleotides GFF1571 and GFF1572 are separated by 182 nucleotides GFF1572 and GFF1573 are separated by 9 nucleotides GFF1573 and GFF1574 are separated by 78 nucleotides GFF1574 and GFF1575 are separated by 89 nucleotides
GFF1569 - CsiR, transcriptional repressor of CsiD, at 32,634 to 33,311
GFF1569
GFF1570 - FIG00638941: hypothetical protein, at 33,333 to 33,782
GFF1570
GFF1571 - FIG00638334: hypothetical protein, at 33,882 to 34,040
GFF1571
GFF1572 - Transcriptional regulator, ArsR family, at 34,223 to 34,522
GFF1572
GFF1573 - Rhodanese-related sulfurtransferases, at 34,532 to 35,059
GFF1573
GFF1574 - corresponds to STY2919 from Accession AL513382: Salmonella typhi CT18, at 35,138 to 35,317
GFF1574
GFF1575 - DNA-binding protein H-NS, at 35,407 to 35,808
GFF1575
Position (kb) 34
35 Strain fitness (log2 ratio) -1
0
1
2 at 33.884 kb on - strand at 33.936 kb on + strand, within GFF1571 at 34.302 kb on + strand, within GFF1572 at 34.315 kb on + strand, within GFF1572 at 34.316 kb on - strand, within GFF1572 at 34.512 kb on - strand at 34.546 kb on - strand at 34.619 kb on + strand, within GFF1573 at 34.762 kb on - strand, within GFF1573 at 34.931 kb on - strand, within GFF1573 at 34.931 kb on - strand, within GFF1573 at 35.023 kb on - strand at 35.091 kb on + strand at 35.091 kb on + strand at 35.111 kb on + strand at 35.112 kb on - strand at 35.114 kb on - strand at 35.114 kb on - strand at 35.161 kb on - strand, within GFF1574 at 35.408 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 1.875 MOI remove 33,884 - +0.2 33,936 + GFF1571 0.34 +0.3 34,302 + GFF1572 0.26 +0.7 34,315 + GFF1572 0.31 +0.9 34,316 - GFF1572 0.31 -0.1 34,512 - +0.4 34,546 - -0.5 34,619 + GFF1573 0.16 -1.2 34,762 - GFF1573 0.44 +0.5 34,931 - GFF1573 0.76 +0.5 34,931 - GFF1573 0.76 -0.1 35,023 - -0.2 35,091 + +0.4 35,091 + +2.6 35,111 + +1.0 35,112 - +0.4 35,114 - +0.4 35,114 - -0.1 35,161 - GFF1574 0.13 +1.5 35,408 + -0.3
Or see this region's nucleotide sequence