Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF120

Experiment: LB_plus_SM_buffer with 6F2_phage 1.875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF117 and GFF118 are separated by 37 nucleotidesGFF118 and GFF119 are separated by 82 nucleotidesGFF119 and GFF120 are separated by 86 nucleotidesGFF120 and GFF121 are separated by 199 nucleotides GFF117 - FIG01045811: hypothetical protein, at 105,257 to 106,048 GFF117 GFF118 - Probable secreted protein, at 106,086 to 106,370 GFF118 GFF119 - hypothetical protein, at 106,453 to 106,572 GFF119 GFF120 - Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4), at 106,659 to 108,083 GFF120 GFF121 - Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12), at 108,283 to 110,172 GFF121 Position (kb) 106 107 108 109Strain fitness (log2 ratio) -1 0 1at 105.672 kb on - strand, within GFF117at 105.672 kb on - strand, within GFF117at 105.693 kb on - strand, within GFF117at 105.699 kb on + strand, within GFF117at 105.759 kb on - strand, within GFF117at 105.857 kb on - strand, within GFF117at 105.955 kb on + strand, within GFF117at 105.956 kb on - strand, within GFF117at 105.960 kb on - strand, within GFF117at 106.003 kb on + strandat 106.003 kb on + strandat 106.437 kb on + strandat 106.495 kb on + strand, within GFF119at 106.660 kb on + strandat 106.701 kb on - strandat 108.284 kb on + strandat 108.285 kb on - strandat 108.315 kb on + strandat 108.315 kb on + strandat 108.448 kb on - strandat 108.448 kb on - strandat 108.529 kb on - strand, within GFF121at 108.529 kb on - strand, within GFF121at 108.807 kb on - strand, within GFF121

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 1.875 MOI
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105,672 - GFF117 0.52 -0.1
105,672 - GFF117 0.52 -0.3
105,693 - GFF117 0.55 -0.9
105,699 + GFF117 0.56 +0.3
105,759 - GFF117 0.63 +0.3
105,857 - GFF117 0.76 +0.2
105,955 + GFF117 0.88 +0.2
105,956 - GFF117 0.88 +0.6
105,960 - GFF117 0.89 -0.0
106,003 + +1.3
106,003 + +0.5
106,437 + -0.4
106,495 + GFF119 0.35 -0.3
106,660 + -0.0
106,701 - -0.9
108,284 + -0.2
108,285 - +0.2
108,315 + -0.4
108,315 + -0.3
108,448 - -0.9
108,448 - -1.1
108,529 - GFF121 0.13 +0.0
108,529 - GFF121 0.13 -1.7
108,807 - GFF121 0.28 -1.7

Or see this region's nucleotide sequence