Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1063

Experiment: LB_plus_SM_buffer with 6F2_phage 1.875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1061 and GFF1062 are separated by 101 nucleotidesGFF1062 and GFF1063 are separated by 48 nucleotidesGFF1063 and GFF1064 overlap by 4 nucleotides GFF1061 - Transcriptional repressor protein TrpR, at 244,382 to 244,708 GFF1061 GFF1062 - Inosine/xanthosine triphosphatase (EC 3.6.1.-), at 244,810 to 245,325 GFF1062 GFF1063 - Phosphoglycerate mutase (EC 5.4.2.1), at 245,374 to 246,021 GFF1063 GFF1064 - Right origin-binding protein, at 246,018 to 246,887 GFF1064 Position (kb) 245 246 247Strain fitness (log2 ratio) -2 -1 0 1at 244.376 kb on + strandat 244.426 kb on + strand, within GFF1061at 244.455 kb on + strand, within GFF1061at 244.495 kb on - strand, within GFF1061at 244.552 kb on + strand, within GFF1061at 244.553 kb on - strand, within GFF1061at 244.718 kb on - strandat 244.796 kb on + strandat 244.797 kb on - strandat 244.865 kb on + strand, within GFF1062at 244.938 kb on + strand, within GFF1062at 244.938 kb on + strand, within GFF1062at 244.938 kb on + strand, within GFF1062at 245.146 kb on - strand, within GFF1062at 245.230 kb on - strand, within GFF1062at 245.233 kb on - strand, within GFF1062at 245.386 kb on + strandat 245.523 kb on + strand, within GFF1063at 245.540 kb on + strand, within GFF1063at 245.856 kb on - strand, within GFF1063at 245.856 kb on - strand, within GFF1063at 246.012 kb on - strandat 246.097 kb on + strandat 246.106 kb on - strand, within GFF1064at 246.106 kb on - strand, within GFF1064at 246.107 kb on + strand, within GFF1064at 246.146 kb on + strand, within GFF1064at 246.202 kb on + strand, within GFF1064at 246.217 kb on + strand, within GFF1064at 246.296 kb on - strand, within GFF1064at 246.301 kb on - strand, within GFF1064at 246.352 kb on + strand, within GFF1064at 246.368 kb on + strand, within GFF1064at 246.369 kb on - strand, within GFF1064at 246.455 kb on - strand, within GFF1064at 246.455 kb on - strand, within GFF1064at 246.483 kb on - strand, within GFF1064at 246.731 kb on - strand, within GFF1064

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 1.875 MOI
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244,376 + -0.3
244,426 + GFF1061 0.13 -0.1
244,455 + GFF1061 0.22 +0.2
244,495 - GFF1061 0.35 -0.0
244,552 + GFF1061 0.52 -0.3
244,553 - GFF1061 0.52 -0.6
244,718 - -0.2
244,796 + -1.1
244,797 - -2.7
244,865 + GFF1062 0.11 +0.1
244,938 + GFF1062 0.25 +1.3
244,938 + GFF1062 0.25 -0.0
244,938 + GFF1062 0.25 +0.4
245,146 - GFF1062 0.65 -0.4
245,230 - GFF1062 0.81 +0.4
245,233 - GFF1062 0.82 +1.2
245,386 + -1.6
245,523 + GFF1063 0.23 +0.1
245,540 + GFF1063 0.26 +0.2
245,856 - GFF1063 0.74 +1.2
245,856 - GFF1063 0.74 -0.4
246,012 - -0.7
246,097 + +1.6
246,106 - GFF1064 0.10 +0.0
246,106 - GFF1064 0.10 +0.6
246,107 + GFF1064 0.10 -0.5
246,146 + GFF1064 0.15 -0.5
246,202 + GFF1064 0.21 -0.7
246,217 + GFF1064 0.23 +0.1
246,296 - GFF1064 0.32 +0.4
246,301 - GFF1064 0.33 -0.4
246,352 + GFF1064 0.38 -0.2
246,368 + GFF1064 0.40 +0.2
246,369 - GFF1064 0.40 +0.1
246,455 - GFF1064 0.50 +0.0
246,455 - GFF1064 0.50 -0.4
246,483 - GFF1064 0.53 +0.5
246,731 - GFF1064 0.82 +0.8

Or see this region's nucleotide sequence