Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1020

Experiment: LB_plus_SM_buffer with 6F2_phage 1.875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1018 and GFF1019 are separated by 282 nucleotidesGFF1019 and GFF1020 are separated by 57 nucleotidesGFF1020 and GFF1021 are separated by 2 nucleotidesGFF1021 and GFF1022 are separated by 92 nucleotides GFF1018 - Phosphoglycerol transferase I (EC 2.7.8.20), at 203,051 to 205,342 GFF1018 GFF1019 - Putative glycoprotein/receptor, at 205,625 to 206,086 GFF1019 GFF1020 - DNA replication protein DnaC, at 206,144 to 206,881 GFF1020 GFF1021 - Primosomal protein I, at 206,884 to 207,423 GFF1021 GFF1022 - FIG001826: putative inner membrane protein, at 207,516 to 207,989 GFF1022 Position (kb) 206 207Strain fitness (log2 ratio) -1 0 1 2at 205.156 kb on + strandat 205.293 kb on + strandat 205.293 kb on + strandat 205.293 kb on + strandat 205.293 kb on + strandat 205.293 kb on + strandat 205.295 kb on + strandat 205.295 kb on + strandat 205.296 kb on - strandat 205.296 kb on - strandat 205.399 kb on + strandat 205.402 kb on + strandat 205.502 kb on + strandat 205.774 kb on + strand, within GFF1019at 205.900 kb on + strand, within GFF1019at 205.901 kb on - strand, within GFF1019at 206.040 kb on - strandat 206.040 kb on - strandat 206.080 kb on + strandat 206.080 kb on + strandat 206.081 kb on - strandat 206.090 kb on - strandat 207.424 kb on - strandat 207.424 kb on - strandat 207.490 kb on - strandat 207.490 kb on - strandat 207.547 kb on - strandat 207.683 kb on - strand, within GFF1022at 207.842 kb on + strand, within GFF1022

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 1.875 MOI
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205,156 + +0.8
205,293 + +0.8
205,293 + +0.1
205,293 + +0.5
205,293 + +2.2
205,293 + +0.3
205,295 + +1.4
205,295 + +0.0
205,296 - +1.1
205,296 - +0.7
205,399 + +0.2
205,402 + +0.1
205,502 + -0.5
205,774 + GFF1019 0.32 +0.3
205,900 + GFF1019 0.60 +0.3
205,901 - GFF1019 0.60 -1.0
206,040 - +0.5
206,040 - -0.3
206,080 + +0.5
206,080 + +0.2
206,081 - -0.0
206,090 - -0.3
207,424 - -0.1
207,424 - -1.3
207,490 - -0.5
207,490 - +0.1
207,547 - -0.1
207,683 - GFF1022 0.35 -0.1
207,842 + GFF1022 0.69 -0.5

Or see this region's nucleotide sequence