Experiment: R2A with m-arsenite 0.8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu2821 and Atu2822 are separated by 42 nucleotides Atu2822 and Atu2823 are separated by 84 nucleotides
Atu2821: Atu2821 - transcriptional regulator, GntR family, at 2,823,977 to 2,824,669
Atu2821
Atu2822: Atu2822 - D-galactarate dehydratase, at 2,824,712 to 2,826,244
Atu2822
Atu2823: Atu2823 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 2,826,329 to 2,827,945
Atu2823
Position (kb)
2824
2825
2826
2827 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2823.730 kb on + strand at 2823.738 kb on - strand at 2823.738 kb on - strand at 2823.759 kb on + strand at 2823.759 kb on + strand at 2823.759 kb on + strand at 2823.759 kb on + strand at 2823.759 kb on + strand at 2823.759 kb on + strand at 2823.759 kb on + strand at 2823.767 kb on - strand at 2823.767 kb on - strand at 2823.778 kb on - strand at 2824.056 kb on - strand, within Atu2821 at 2824.172 kb on + strand, within Atu2821 at 2824.196 kb on - strand, within Atu2821 at 2824.296 kb on + strand, within Atu2821 at 2824.497 kb on + strand, within Atu2821 at 2824.541 kb on + strand, within Atu2821 at 2824.753 kb on + strand at 2824.776 kb on + strand at 2824.789 kb on - strand at 2824.916 kb on + strand, within Atu2822 at 2824.985 kb on + strand, within Atu2822 at 2825.022 kb on - strand, within Atu2822 at 2825.023 kb on + strand, within Atu2822 at 2825.059 kb on - strand, within Atu2822 at 2825.108 kb on + strand, within Atu2822 at 2825.129 kb on + strand, within Atu2822 at 2825.204 kb on + strand, within Atu2822 at 2825.212 kb on - strand, within Atu2822 at 2825.258 kb on - strand, within Atu2822 at 2825.263 kb on + strand, within Atu2822 at 2825.271 kb on + strand, within Atu2822 at 2825.281 kb on - strand, within Atu2822 at 2825.411 kb on - strand, within Atu2822 at 2825.515 kb on + strand, within Atu2822 at 2825.561 kb on + strand, within Atu2822 at 2825.619 kb on + strand, within Atu2822 at 2825.720 kb on + strand, within Atu2822 at 2825.739 kb on - strand, within Atu2822 at 2825.833 kb on + strand, within Atu2822 at 2825.897 kb on + strand, within Atu2822 at 2825.899 kb on - strand, within Atu2822 at 2826.050 kb on - strand, within Atu2822 at 2826.069 kb on - strand, within Atu2822
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with m-arsenite 0.8 mM remove 2,823,730 + -1.1 2,823,738 - -0.6 2,823,738 - +0.3 2,823,759 + +0.4 2,823,759 + -0.8 2,823,759 + -0.2 2,823,759 + -0.8 2,823,759 + +0.7 2,823,759 + -0.2 2,823,759 + -0.3 2,823,767 - -0.6 2,823,767 - -0.7 2,823,778 - +1.5 2,824,056 - Atu2821 0.11 -4.2 2,824,172 + Atu2821 0.28 -3.5 2,824,196 - Atu2821 0.32 -0.9 2,824,296 + Atu2821 0.46 -3.4 2,824,497 + Atu2821 0.75 -1.6 2,824,541 + Atu2821 0.81 -2.3 2,824,753 + +0.5 2,824,776 + -0.4 2,824,789 - +0.2 2,824,916 + Atu2822 0.13 +0.3 2,824,985 + Atu2822 0.18 -0.1 2,825,022 - Atu2822 0.20 -0.5 2,825,023 + Atu2822 0.20 -0.4 2,825,059 - Atu2822 0.23 +0.1 2,825,108 + Atu2822 0.26 -0.3 2,825,129 + Atu2822 0.27 +0.1 2,825,204 + Atu2822 0.32 +0.3 2,825,212 - Atu2822 0.33 +0.7 2,825,258 - Atu2822 0.36 -0.3 2,825,263 + Atu2822 0.36 -0.1 2,825,271 + Atu2822 0.36 +0.5 2,825,281 - Atu2822 0.37 -1.9 2,825,411 - Atu2822 0.46 +0.2 2,825,515 + Atu2822 0.52 +0.7 2,825,561 + Atu2822 0.55 +0.4 2,825,619 + Atu2822 0.59 +0.1 2,825,720 + Atu2822 0.66 +1.5 2,825,739 - Atu2822 0.67 -0.1 2,825,833 + Atu2822 0.73 -0.5 2,825,897 + Atu2822 0.77 +1.4 2,825,899 - Atu2822 0.77 +0.6 2,826,050 - Atu2822 0.87 +1.0 2,826,069 - Atu2822 0.89 -0.0
Or see this region's nucleotide sequence