Strain Fitness in Agrobacterium fabrum C58 around Atu1094

Experiment: R2A with m-arsenite 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1093 and Atu1094 are separated by 169 nucleotidesAtu1094 and Atu1095 are separated by 78 nucleotides Atu1093: Atu1093 - aldo/keto reductase, at 1,082,770 to 1,083,813 Atu1093 Atu1094: Atu1094 - malonyl-CoA:acyl carrier protein transacylase, at 1,083,983 to 1,084,978 Atu1094 Atu1095: Atu1095 - 3-oxoacyl-(acyl carrier protein) reductase, at 1,085,057 to 1,085,794 Atu1095 Position (kb) 1083 1084 1085Strain fitness (log2 ratio) -1 0 1at 1082.989 kb on - strand, within Atu1093at 1083.128 kb on - strand, within Atu1093at 1083.167 kb on - strand, within Atu1093at 1083.180 kb on + strand, within Atu1093at 1083.188 kb on - strand, within Atu1093at 1083.188 kb on - strand, within Atu1093at 1083.190 kb on + strand, within Atu1093at 1083.226 kb on - strand, within Atu1093at 1083.262 kb on - strand, within Atu1093at 1083.307 kb on - strand, within Atu1093at 1083.374 kb on - strand, within Atu1093at 1083.436 kb on - strand, within Atu1093at 1083.438 kb on + strand, within Atu1093at 1083.452 kb on + strand, within Atu1093at 1083.460 kb on - strand, within Atu1093at 1083.534 kb on + strand, within Atu1093at 1083.602 kb on + strand, within Atu1093at 1083.610 kb on - strand, within Atu1093at 1083.612 kb on - strand, within Atu1093at 1083.653 kb on + strand, within Atu1093at 1083.661 kb on - strand, within Atu1093at 1083.668 kb on - strand, within Atu1093at 1083.688 kb on + strand, within Atu1093at 1083.706 kb on - strand, within Atu1093at 1083.740 kb on - strandat 1083.743 kb on + strandat 1083.766 kb on + strandat 1083.774 kb on - strandat 1083.778 kb on + strandat 1083.793 kb on + strandat 1083.849 kb on + strandat 1083.997 kb on + strandat 1085.819 kb on + strandat 1085.899 kb on + strandat 1085.899 kb on + strandat 1085.899 kb on + strandat 1085.906 kb on + strandat 1085.912 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with m-arsenite 0.8 mM
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1,082,989 - Atu1093 0.21 +0.3
1,083,128 - Atu1093 0.34 -0.4
1,083,167 - Atu1093 0.38 -0.0
1,083,180 + Atu1093 0.39 -0.8
1,083,188 - Atu1093 0.40 +0.1
1,083,188 - Atu1093 0.40 +0.0
1,083,190 + Atu1093 0.40 -1.2
1,083,226 - Atu1093 0.44 +1.4
1,083,262 - Atu1093 0.47 -0.1
1,083,307 - Atu1093 0.51 -0.3
1,083,374 - Atu1093 0.58 +0.0
1,083,436 - Atu1093 0.64 -0.0
1,083,438 + Atu1093 0.64 +1.7
1,083,452 + Atu1093 0.65 +0.1
1,083,460 - Atu1093 0.66 -0.1
1,083,534 + Atu1093 0.73 +0.9
1,083,602 + Atu1093 0.80 -0.3
1,083,610 - Atu1093 0.80 -0.6
1,083,612 - Atu1093 0.81 -0.4
1,083,653 + Atu1093 0.85 +0.3
1,083,661 - Atu1093 0.85 -0.1
1,083,668 - Atu1093 0.86 -0.1
1,083,688 + Atu1093 0.88 -0.4
1,083,706 - Atu1093 0.90 +0.1
1,083,740 - +0.1
1,083,743 + -0.2
1,083,766 + +1.5
1,083,774 - +0.8
1,083,778 + -0.1
1,083,793 + -0.0
1,083,849 + -0.1
1,083,997 + +1.0
1,085,819 + +0.7
1,085,899 + -1.2
1,085,899 + +1.3
1,085,899 + +0.4
1,085,906 + -0.6
1,085,912 - -0.9

Or see this region's nucleotide sequence