Experiment: R2A with m-arsenite 0.8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0945 and Atu0946 are separated by 150 nucleotides Atu0946 and Atu0947 are separated by 124 nucleotides Atu0947 and Atu0948 are separated by 31 nucleotides
Atu0945: Atu0945 - hypothetical protein, at 933,626 to 935,086
Atu0945
Atu0946: Atu0946 - dehydrogenase, at 935,237 to 936,337
Atu0946
Atu0947: Atu0947 - transcriptional regulator, AsnC family, at 936,462 to 936,893
Atu0947
Atu0948: Atu0948 - hypothetical protein, at 936,925 to 937,293
Atu0948
Position (kb) 935
936
937 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 934.279 kb on + strand, within Atu0945 at 934.343 kb on - strand, within Atu0945 at 934.343 kb on - strand, within Atu0945 at 934.355 kb on - strand, within Atu0945 at 934.469 kb on + strand, within Atu0945 at 934.578 kb on - strand, within Atu0945 at 934.698 kb on - strand, within Atu0945 at 934.727 kb on - strand, within Atu0945 at 934.835 kb on - strand, within Atu0945 at 934.923 kb on + strand, within Atu0945 at 934.952 kb on - strand at 935.025 kb on - strand at 935.039 kb on - strand at 935.169 kb on - strand at 935.173 kb on + strand at 935.173 kb on + strand at 935.230 kb on + strand at 935.257 kb on + strand at 935.276 kb on - strand at 935.276 kb on - strand at 935.366 kb on + strand, within Atu0946 at 935.374 kb on - strand, within Atu0946 at 935.374 kb on - strand, within Atu0946 at 935.399 kb on + strand, within Atu0946 at 935.529 kb on + strand, within Atu0946 at 935.529 kb on + strand, within Atu0946 at 935.537 kb on - strand, within Atu0946 at 935.628 kb on + strand, within Atu0946 at 935.970 kb on + strand, within Atu0946 at 935.973 kb on - strand, within Atu0946 at 936.014 kb on + strand, within Atu0946 at 936.014 kb on + strand, within Atu0946 at 936.022 kb on - strand, within Atu0946 at 936.050 kb on - strand, within Atu0946 at 936.060 kb on - strand, within Atu0946 at 936.292 kb on + strand at 936.303 kb on + strand at 936.310 kb on - strand at 936.535 kb on - strand, within Atu0947 at 936.661 kb on + strand, within Atu0947 at 936.661 kb on + strand, within Atu0947 at 936.676 kb on + strand, within Atu0947 at 936.857 kb on + strand at 936.906 kb on + strand at 936.906 kb on + strand at 936.906 kb on + strand at 936.906 kb on + strand at 936.906 kb on + strand at 936.906 kb on + strand at 936.923 kb on + strand at 937.121 kb on - strand, within Atu0948 at 937.148 kb on + strand, within Atu0948 at 937.213 kb on - strand, within Atu0948 at 937.237 kb on + strand, within Atu0948 at 937.237 kb on + strand, within Atu0948 at 937.237 kb on + strand, within Atu0948 at 937.240 kb on - strand, within Atu0948 at 937.245 kb on - strand, within Atu0948 at 937.245 kb on - strand, within Atu0948 at 937.245 kb on - strand, within Atu0948
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with m-arsenite 0.8 mM remove 934,279 + Atu0945 0.45 -0.3 934,343 - Atu0945 0.49 -0.6 934,343 - Atu0945 0.49 -1.3 934,355 - Atu0945 0.50 -1.6 934,469 + Atu0945 0.58 -1.0 934,578 - Atu0945 0.65 -2.5 934,698 - Atu0945 0.73 +0.8 934,727 - Atu0945 0.75 -0.2 934,835 - Atu0945 0.83 -0.6 934,923 + Atu0945 0.89 -1.4 934,952 - +0.3 935,025 - +1.3 935,039 - -0.5 935,169 - -0.8 935,173 + +1.4 935,173 + +0.4 935,230 + -0.7 935,257 + -2.3 935,276 - -1.6 935,276 - +0.3 935,366 + Atu0946 0.12 -0.7 935,374 - Atu0946 0.12 -2.4 935,374 - Atu0946 0.12 -2.5 935,399 + Atu0946 0.15 -0.9 935,529 + Atu0946 0.27 -2.5 935,529 + Atu0946 0.27 -1.7 935,537 - Atu0946 0.27 -1.2 935,628 + Atu0946 0.36 -2.3 935,970 + Atu0946 0.67 -0.1 935,973 - Atu0946 0.67 -0.8 936,014 + Atu0946 0.71 +1.2 936,014 + Atu0946 0.71 -2.8 936,022 - Atu0946 0.71 -0.0 936,050 - Atu0946 0.74 -0.3 936,060 - Atu0946 0.75 +0.6 936,292 + -0.5 936,303 + -2.4 936,310 - -0.3 936,535 - Atu0947 0.17 -0.4 936,661 + Atu0947 0.46 -0.5 936,661 + Atu0947 0.46 -1.6 936,676 + Atu0947 0.50 -1.3 936,857 + -1.8 936,906 + +0.1 936,906 + -1.2 936,906 + -1.3 936,906 + +1.2 936,906 + +0.5 936,906 + +0.4 936,923 + -0.6 937,121 - Atu0948 0.53 +0.6 937,148 + Atu0948 0.60 -2.9 937,213 - Atu0948 0.78 -0.3 937,237 + Atu0948 0.85 -1.4 937,237 + Atu0948 0.85 +1.2 937,237 + Atu0948 0.85 +0.4 937,240 - Atu0948 0.85 +0.0 937,245 - Atu0948 0.87 +0.7 937,245 - Atu0948 0.87 -1.3 937,245 - Atu0948 0.87 -1.5
Or see this region's nucleotide sequence