Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS29005 and ABID97_RS29010 are separated by 45 nucleotides ABID97_RS29010 and ABID97_RS29015 are separated by 184 nucleotides
ABID97_RS29005: ABID97_RS29005 - tripartite tricarboxylate transporter substrate binding protein, at 718,771 to 719,736
_RS29005
ABID97_RS29010: ABID97_RS29010 - SMP-30/gluconolactonase/LRE family protein, at 719,782 to 720,687
_RS29010
ABID97_RS29015: ABID97_RS29015 - transcriptional regulator GcvA, at 720,872 to 721,768
_RS29015
Position (kb) 719
720
721 Strain fitness (log2 ratio) -2
-1
0
1
2 at 719.192 kb on + strand, within ABID97_RS29005 at 719.475 kb on - strand, within ABID97_RS29005 at 719.546 kb on + strand, within ABID97_RS29005 at 719.546 kb on + strand, within ABID97_RS29005 at 719.547 kb on - strand, within ABID97_RS29005 at 719.547 kb on - strand, within ABID97_RS29005 at 719.547 kb on - strand, within ABID97_RS29005 at 719.547 kb on - strand, within ABID97_RS29005 at 719.547 kb on - strand, within ABID97_RS29005 at 719.547 kb on - strand, within ABID97_RS29005 at 719.547 kb on - strand, within ABID97_RS29005 at 719.906 kb on + strand, within ABID97_RS29010 at 719.906 kb on + strand, within ABID97_RS29010 at 720.155 kb on + strand, within ABID97_RS29010 at 720.155 kb on + strand, within ABID97_RS29010 at 720.155 kb on + strand, within ABID97_RS29010 at 720.155 kb on + strand, within ABID97_RS29010 at 720.156 kb on - strand, within ABID97_RS29010 at 720.156 kb on - strand, within ABID97_RS29010 at 720.156 kb on - strand, within ABID97_RS29010 at 720.249 kb on - strand, within ABID97_RS29010 at 720.251 kb on + strand, within ABID97_RS29010 at 720.252 kb on - strand, within ABID97_RS29010 at 720.305 kb on + strand, within ABID97_RS29010 at 720.305 kb on + strand, within ABID97_RS29010 at 720.305 kb on + strand, within ABID97_RS29010 at 720.306 kb on - strand, within ABID97_RS29010 at 720.375 kb on - strand, within ABID97_RS29010 at 720.432 kb on - strand, within ABID97_RS29010 at 720.500 kb on + strand, within ABID97_RS29010 at 720.501 kb on - strand, within ABID97_RS29010 at 720.501 kb on - strand, within ABID97_RS29010 at 721.087 kb on - strand, within ABID97_RS29015
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 719,192 + ABID97_RS29005 0.44 -2.1 719,475 - ABID97_RS29005 0.73 +0.9 719,546 + ABID97_RS29005 0.80 -1.2 719,546 + ABID97_RS29005 0.80 -0.3 719,547 - ABID97_RS29005 0.80 +0.1 719,547 - ABID97_RS29005 0.80 +0.7 719,547 - ABID97_RS29005 0.80 -0.3 719,547 - ABID97_RS29005 0.80 -1.8 719,547 - ABID97_RS29005 0.80 +0.1 719,547 - ABID97_RS29005 0.80 -0.2 719,547 - ABID97_RS29005 0.80 -0.4 719,906 + ABID97_RS29010 0.14 -0.5 719,906 + ABID97_RS29010 0.14 +0.1 720,155 + ABID97_RS29010 0.41 -0.2 720,155 + ABID97_RS29010 0.41 -0.4 720,155 + ABID97_RS29010 0.41 +0.0 720,155 + ABID97_RS29010 0.41 -0.2 720,156 - ABID97_RS29010 0.41 -0.9 720,156 - ABID97_RS29010 0.41 -0.7 720,156 - ABID97_RS29010 0.41 +0.0 720,249 - ABID97_RS29010 0.52 -0.1 720,251 + ABID97_RS29010 0.52 -1.6 720,252 - ABID97_RS29010 0.52 -0.8 720,305 + ABID97_RS29010 0.58 -0.8 720,305 + ABID97_RS29010 0.58 -0.3 720,305 + ABID97_RS29010 0.58 +0.2 720,306 - ABID97_RS29010 0.58 +1.2 720,375 - ABID97_RS29010 0.65 -0.9 720,432 - ABID97_RS29010 0.72 -0.4 720,500 + ABID97_RS29010 0.79 +0.3 720,501 - ABID97_RS29010 0.79 -0.5 720,501 - ABID97_RS29010 0.79 -0.1 721,087 - ABID97_RS29015 0.24 +1.9
Or see this region's nucleotide sequence