Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28155 and ABID97_RS28160 are separated by 97 nucleotides ABID97_RS28160 and ABID97_RS28165 are separated by 201 nucleotides
ABID97_RS28155: ABID97_RS28155 - YihY/virulence factor BrkB family protein, at 549,797 to 550,933
_RS28155
ABID97_RS28160: ABID97_RS28160 - sensor domain-containing diguanylate cyclase, at 551,031 to 552,563
_RS28160
ABID97_RS28165: ABID97_RS28165 - tannase/feruloyl esterase family alpha/beta hydrolase, at 552,765 to 554,540
_RS28165
Position (kb) 551
552
553 Strain fitness (log2 ratio) -1
0
1
2 at 550.111 kb on - strand, within ABID97_RS28155 at 550.155 kb on + strand, within ABID97_RS28155 at 550.231 kb on - strand, within ABID97_RS28155 at 550.333 kb on - strand, within ABID97_RS28155 at 550.836 kb on + strand at 550.837 kb on - strand at 551.033 kb on - strand at 551.033 kb on - strand at 551.092 kb on + strand at 551.405 kb on - strand, within ABID97_RS28160 at 551.416 kb on + strand, within ABID97_RS28160 at 551.863 kb on + strand, within ABID97_RS28160 at 551.863 kb on + strand, within ABID97_RS28160 at 551.996 kb on - strand, within ABID97_RS28160 at 552.169 kb on + strand, within ABID97_RS28160 at 552.170 kb on - strand, within ABID97_RS28160 at 552.170 kb on - strand, within ABID97_RS28160 at 553.000 kb on - strand, within ABID97_RS28165 at 553.125 kb on + strand, within ABID97_RS28165 at 553.126 kb on - strand, within ABID97_RS28165 at 553.126 kb on - strand, within ABID97_RS28165 at 553.179 kb on + strand, within ABID97_RS28165 at 553.180 kb on - strand, within ABID97_RS28165 at 553.180 kb on - strand, within ABID97_RS28165 at 553.353 kb on + strand, within ABID97_RS28165 at 553.360 kb on - strand, within ABID97_RS28165 at 553.360 kb on - strand, within ABID97_RS28165 at 553.438 kb on - strand, within ABID97_RS28165
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 550,111 - ABID97_RS28155 0.28 +0.4 550,155 + ABID97_RS28155 0.31 +0.3 550,231 - ABID97_RS28155 0.38 +0.3 550,333 - ABID97_RS28155 0.47 +0.5 550,836 + -0.3 550,837 - +1.7 551,033 - +0.8 551,033 - -0.9 551,092 + +0.0 551,405 - ABID97_RS28160 0.24 +0.1 551,416 + ABID97_RS28160 0.25 +2.4 551,863 + ABID97_RS28160 0.54 +1.0 551,863 + ABID97_RS28160 0.54 -0.3 551,996 - ABID97_RS28160 0.63 +0.3 552,169 + ABID97_RS28160 0.74 +1.3 552,170 - ABID97_RS28160 0.74 -0.3 552,170 - ABID97_RS28160 0.74 -0.7 553,000 - ABID97_RS28165 0.13 +0.4 553,125 + ABID97_RS28165 0.20 -0.3 553,126 - ABID97_RS28165 0.20 +1.3 553,126 - ABID97_RS28165 0.20 +0.1 553,179 + ABID97_RS28165 0.23 -1.0 553,180 - ABID97_RS28165 0.23 +0.3 553,180 - ABID97_RS28165 0.23 -0.8 553,353 + ABID97_RS28165 0.33 +0.3 553,360 - ABID97_RS28165 0.34 +0.1 553,360 - ABID97_RS28165 0.34 +0.4 553,438 - ABID97_RS28165 0.38 -0.6
Or see this region's nucleotide sequence