Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27005

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26995 and ABID97_RS27000 are separated by 225 nucleotidesABID97_RS27000 and ABID97_RS27005 are separated by 25 nucleotidesABID97_RS27005 and ABID97_RS27010 overlap by 4 nucleotidesABID97_RS27010 and ABID97_RS27015 overlap by 4 nucleotides ABID97_RS26995: ABID97_RS26995 - Crp/Fnr family transcriptional regulator, at 319,288 to 320,076 _RS26995 ABID97_RS27000: ABID97_RS27000 - DUF2282 domain-containing protein, at 320,302 to 320,589 _RS27000 ABID97_RS27005: ABID97_RS27005 - DUF692 domain-containing protein, at 320,615 to 321,457 _RS27005 ABID97_RS27010: ABID97_RS27010 - DNA-binding domain-containing protein, at 321,454 to 322,242 _RS27010 ABID97_RS27015: ABID97_RS27015 - DoxX family protein, at 322,239 to 322,724 _RS27015 Position (kb) 320 321 322Strain fitness (log2 ratio) -1 0 1 2 3at 319.676 kb on - strand, within ABID97_RS26995at 319.906 kb on + strand, within ABID97_RS26995at 319.907 kb on - strand, within ABID97_RS26995at 319.907 kb on - strand, within ABID97_RS26995at 320.495 kb on - strand, within ABID97_RS27000at 320.599 kb on + strandat 320.600 kb on - strandat 320.720 kb on + strand, within ABID97_RS27005at 320.721 kb on - strand, within ABID97_RS27005at 320.721 kb on - strand, within ABID97_RS27005at 321.946 kb on + strand, within ABID97_RS27010at 322.395 kb on + strand, within ABID97_RS27015

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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319,676 - ABID97_RS26995 0.49 +1.1
319,906 + ABID97_RS26995 0.78 +0.0
319,907 - ABID97_RS26995 0.78 -0.8
319,907 - ABID97_RS26995 0.78 +0.3
320,495 - ABID97_RS27000 0.67 -0.2
320,599 + +0.3
320,600 - +3.0
320,720 + ABID97_RS27005 0.12 +0.4
320,721 - ABID97_RS27005 0.13 +0.1
320,721 - ABID97_RS27005 0.13 +3.4
321,946 + ABID97_RS27010 0.62 -0.1
322,395 + ABID97_RS27015 0.32 +0.3

Or see this region's nucleotide sequence