Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25785

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25780 and ABID97_RS25785 are separated by 10 nucleotidesABID97_RS25785 and ABID97_RS25790 are separated by 119 nucleotides ABID97_RS25780: ABID97_RS25780 - NAD-dependent succinate-semialdehyde dehydrogenase, at 76,331 to 77,800 _RS25780 ABID97_RS25785: ABID97_RS25785 - LysR substrate-binding domain-containing protein, at 77,811 to 78,722 _RS25785 ABID97_RS25790: ABID97_RS25790 - alkaline phosphatase family protein, at 78,842 to 80,545 _RS25790 Position (kb) 77 78 79Strain fitness (log2 ratio) -1 0 1 2at 77.447 kb on + strand, within ABID97_RS25780at 77.447 kb on + strand, within ABID97_RS25780at 77.447 kb on + strand, within ABID97_RS25780at 77.448 kb on - strand, within ABID97_RS25780at 77.450 kb on + strand, within ABID97_RS25780at 77.777 kb on + strandat 77.777 kb on + strandat 78.802 kb on + strandat 79.022 kb on + strand, within ABID97_RS25790at 79.022 kb on + strand, within ABID97_RS25790at 79.299 kb on - strand, within ABID97_RS25790at 79.307 kb on + strand, within ABID97_RS25790at 79.307 kb on + strand, within ABID97_RS25790at 79.457 kb on + strand, within ABID97_RS25790at 79.457 kb on + strand, within ABID97_RS25790at 79.458 kb on - strand, within ABID97_RS25790at 79.526 kb on + strand, within ABID97_RS25790at 79.527 kb on - strand, within ABID97_RS25790at 79.548 kb on - strand, within ABID97_RS25790at 79.578 kb on - strand, within ABID97_RS25790at 79.644 kb on - strand, within ABID97_RS25790at 79.718 kb on + strand, within ABID97_RS25790at 79.719 kb on - strand, within ABID97_RS25790

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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77,447 + ABID97_RS25780 0.76 -0.2
77,447 + ABID97_RS25780 0.76 -0.3
77,447 + ABID97_RS25780 0.76 -0.6
77,448 - ABID97_RS25780 0.76 -0.0
77,450 + ABID97_RS25780 0.76 +0.3
77,777 + -0.8
77,777 + +1.2
78,802 + +0.0
79,022 + ABID97_RS25790 0.11 +0.2
79,022 + ABID97_RS25790 0.11 +0.1
79,299 - ABID97_RS25790 0.27 +0.7
79,307 + ABID97_RS25790 0.27 -0.0
79,307 + ABID97_RS25790 0.27 -0.1
79,457 + ABID97_RS25790 0.36 -0.1
79,457 + ABID97_RS25790 0.36 +0.1
79,458 - ABID97_RS25790 0.36 -0.1
79,526 + ABID97_RS25790 0.40 -0.8
79,527 - ABID97_RS25790 0.40 -0.8
79,548 - ABID97_RS25790 0.41 +0.2
79,578 - ABID97_RS25790 0.43 -1.1
79,644 - ABID97_RS25790 0.47 +0.4
79,718 + ABID97_RS25790 0.51 +1.9
79,719 - ABID97_RS25790 0.51 +1.1

Or see this region's nucleotide sequence