Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24890 and ABID97_RS24895 overlap by 8 nucleotides ABID97_RS24895 and ABID97_RS24900 are separated by 47 nucleotides ABID97_RS24900 and ABID97_RS24905 overlap by 4 nucleotides
ABID97_RS24890: ABID97_RS24890 - phosphatase PAP2/dual specificity phosphatase family protein, at 5,157,169 to 5,158,518
_RS24890
ABID97_RS24895: ABID97_RS24895 - hypothetical protein, at 5,158,511 to 5,158,951
_RS24895
ABID97_RS24900: ABID97_RS24900 - lysophospholipid acyltransferase family protein, at 5,158,999 to 5,159,670
_RS24900
ABID97_RS24905: ABID97_RS24905 - phosphatidate cytidylyltransferase, at 5,159,667 to 5,160,620
_RS24905
Position (kb) 5158
5159 Strain fitness (log2 ratio) -1
0
1
2 at 5157.561 kb on + strand, within ABID97_RS24890 at 5157.562 kb on + strand, within ABID97_RS24890 at 5157.563 kb on - strand, within ABID97_RS24890 at 5157.844 kb on + strand, within ABID97_RS24890 at 5157.845 kb on - strand, within ABID97_RS24890 at 5157.845 kb on - strand, within ABID97_RS24890 at 5157.845 kb on - strand, within ABID97_RS24890 at 5157.845 kb on - strand, within ABID97_RS24890 at 5157.845 kb on - strand, within ABID97_RS24890 at 5157.884 kb on - strand, within ABID97_RS24890 at 5157.949 kb on + strand, within ABID97_RS24890 at 5158.030 kb on + strand, within ABID97_RS24890 at 5158.700 kb on + strand, within ABID97_RS24895 at 5158.701 kb on - strand, within ABID97_RS24895 at 5158.701 kb on - strand, within ABID97_RS24895 at 5159.116 kb on + strand, within ABID97_RS24900 at 5159.116 kb on + strand, within ABID97_RS24900 at 5159.117 kb on - strand, within ABID97_RS24900 at 5159.215 kb on + strand, within ABID97_RS24900 at 5159.895 kb on + strand, within ABID97_RS24905 at 5159.895 kb on + strand, within ABID97_RS24905 at 5159.896 kb on - strand, within ABID97_RS24905 at 5159.941 kb on - strand, within ABID97_RS24905 at 5159.941 kb on - strand, within ABID97_RS24905 at 5159.941 kb on - strand, within ABID97_RS24905
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 5,157,561 + ABID97_RS24890 0.29 -1.1 5,157,562 + ABID97_RS24890 0.29 -0.3 5,157,563 - ABID97_RS24890 0.29 +0.4 5,157,844 + ABID97_RS24890 0.50 -1.4 5,157,845 - ABID97_RS24890 0.50 -0.1 5,157,845 - ABID97_RS24890 0.50 +0.1 5,157,845 - ABID97_RS24890 0.50 +0.4 5,157,845 - ABID97_RS24890 0.50 -0.4 5,157,845 - ABID97_RS24890 0.50 -0.4 5,157,884 - ABID97_RS24890 0.53 -0.4 5,157,949 + ABID97_RS24890 0.58 +0.1 5,158,030 + ABID97_RS24890 0.64 -1.6 5,158,700 + ABID97_RS24895 0.43 +0.3 5,158,701 - ABID97_RS24895 0.43 +0.4 5,158,701 - ABID97_RS24895 0.43 -0.6 5,159,116 + ABID97_RS24900 0.17 +0.2 5,159,116 + ABID97_RS24900 0.17 -0.3 5,159,117 - ABID97_RS24900 0.18 +0.5 5,159,215 + ABID97_RS24900 0.32 -0.4 5,159,895 + ABID97_RS24905 0.24 +2.1 5,159,895 + ABID97_RS24905 0.24 -0.2 5,159,896 - ABID97_RS24905 0.24 -0.4 5,159,941 - ABID97_RS24905 0.29 -0.6 5,159,941 - ABID97_RS24905 0.29 +0.1 5,159,941 - ABID97_RS24905 0.29 +0.0
Or see this region's nucleotide sequence