Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24625 and ABID97_RS24630 are separated by 38 nucleotides ABID97_RS24630 and ABID97_RS24635 are separated by 132 nucleotides ABID97_RS24635 and ABID97_RS24640 are separated by 184 nucleotides
ABID97_RS24625: ABID97_RS24625 - sensor histidine kinase, at 5,098,183 to 5,099,304
_RS24625
ABID97_RS24630: ABID97_RS24630 - class I SAM-dependent methyltransferase, at 5,099,343 to 5,099,963
_RS24630
ABID97_RS24635: ABID97_RS24635 - hypothetical protein, at 5,100,096 to 5,100,308
_RS24635
ABID97_RS24640: ABID97_RS24640 - OmpA family protein, at 5,100,493 to 5,101,077
_RS24640
Position (kb) 5099
5100 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5098.610 kb on - strand, within ABID97_RS24625 at 5098.610 kb on - strand, within ABID97_RS24625 at 5098.610 kb on - strand, within ABID97_RS24625 at 5098.748 kb on + strand, within ABID97_RS24625 at 5098.748 kb on + strand, within ABID97_RS24625 at 5098.749 kb on - strand, within ABID97_RS24625 at 5098.807 kb on + strand, within ABID97_RS24625 at 5098.808 kb on - strand, within ABID97_RS24625 at 5098.808 kb on - strand, within ABID97_RS24625 at 5099.414 kb on - strand, within ABID97_RS24630 at 5099.414 kb on - strand, within ABID97_RS24630 at 5099.452 kb on + strand, within ABID97_RS24630 at 5099.453 kb on - strand, within ABID97_RS24630 at 5099.453 kb on - strand, within ABID97_RS24630 at 5099.453 kb on - strand, within ABID97_RS24630 at 5099.530 kb on + strand, within ABID97_RS24630 at 5099.530 kb on + strand, within ABID97_RS24630 at 5099.626 kb on + strand, within ABID97_RS24630 at 5099.626 kb on + strand, within ABID97_RS24630 at 5099.627 kb on - strand, within ABID97_RS24630 at 5099.627 kb on - strand, within ABID97_RS24630 at 5099.627 kb on - strand, within ABID97_RS24630 at 5099.627 kb on - strand, within ABID97_RS24630 at 5099.752 kb on + strand, within ABID97_RS24630 at 5099.752 kb on + strand, within ABID97_RS24630 at 5099.752 kb on + strand, within ABID97_RS24630 at 5099.752 kb on + strand, within ABID97_RS24630 at 5099.752 kb on + strand, within ABID97_RS24630 at 5099.752 kb on + strand, within ABID97_RS24630 at 5099.753 kb on - strand, within ABID97_RS24630 at 5099.753 kb on - strand, within ABID97_RS24630 at 5099.753 kb on - strand, within ABID97_RS24630 at 5099.857 kb on + strand, within ABID97_RS24630 at 5099.858 kb on - strand, within ABID97_RS24630 at 5099.858 kb on - strand, within ABID97_RS24630 at 5099.858 kb on - strand, within ABID97_RS24630 at 5099.858 kb on - strand, within ABID97_RS24630 at 5099.858 kb on - strand, within ABID97_RS24630 at 5099.858 kb on - strand, within ABID97_RS24630 at 5099.993 kb on + strand at 5099.993 kb on + strand at 5099.994 kb on - strand at 5100.285 kb on + strand, within ABID97_RS24635 at 5100.286 kb on - strand, within ABID97_RS24635 at 5100.300 kb on + strand at 5100.300 kb on + strand at 5100.300 kb on + strand at 5100.301 kb on - strand at 5100.410 kb on + strand at 5100.450 kb on + strand at 5100.450 kb on + strand at 5100.451 kb on - strand at 5100.454 kb on + strand at 5100.455 kb on - strand at 5100.455 kb on - strand at 5100.455 kb on - strand at 5100.478 kb on + strand at 5100.479 kb on - strand at 5100.479 kb on - strand at 5100.479 kb on - strand at 5100.480 kb on + strand at 5100.480 kb on + strand at 5100.480 kb on + strand at 5100.663 kb on - strand, within ABID97_RS24640
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 5,098,610 - ABID97_RS24625 0.38 +1.0 5,098,610 - ABID97_RS24625 0.38 -0.7 5,098,610 - ABID97_RS24625 0.38 +0.4 5,098,748 + ABID97_RS24625 0.50 +1.2 5,098,748 + ABID97_RS24625 0.50 +0.0 5,098,749 - ABID97_RS24625 0.50 +0.2 5,098,807 + ABID97_RS24625 0.56 -0.4 5,098,808 - ABID97_RS24625 0.56 +1.9 5,098,808 - ABID97_RS24625 0.56 -0.6 5,099,414 - ABID97_RS24630 0.11 -0.4 5,099,414 - ABID97_RS24630 0.11 +0.7 5,099,452 + ABID97_RS24630 0.18 +0.1 5,099,453 - ABID97_RS24630 0.18 -0.4 5,099,453 - ABID97_RS24630 0.18 +0.4 5,099,453 - ABID97_RS24630 0.18 +1.1 5,099,530 + ABID97_RS24630 0.30 -0.3 5,099,530 + ABID97_RS24630 0.30 +0.1 5,099,626 + ABID97_RS24630 0.46 -0.2 5,099,626 + ABID97_RS24630 0.46 +0.6 5,099,627 - ABID97_RS24630 0.46 +0.5 5,099,627 - ABID97_RS24630 0.46 +0.5 5,099,627 - ABID97_RS24630 0.46 +0.7 5,099,627 - ABID97_RS24630 0.46 -1.0 5,099,752 + ABID97_RS24630 0.66 -0.3 5,099,752 + ABID97_RS24630 0.66 +0.5 5,099,752 + ABID97_RS24630 0.66 +0.4 5,099,752 + ABID97_RS24630 0.66 +0.4 5,099,752 + ABID97_RS24630 0.66 +0.7 5,099,752 + ABID97_RS24630 0.66 -0.7 5,099,753 - ABID97_RS24630 0.66 -1.8 5,099,753 - ABID97_RS24630 0.66 +1.2 5,099,753 - ABID97_RS24630 0.66 +0.4 5,099,857 + ABID97_RS24630 0.83 -0.6 5,099,858 - ABID97_RS24630 0.83 +0.3 5,099,858 - ABID97_RS24630 0.83 -0.3 5,099,858 - ABID97_RS24630 0.83 +0.0 5,099,858 - ABID97_RS24630 0.83 -0.5 5,099,858 - ABID97_RS24630 0.83 -0.8 5,099,858 - ABID97_RS24630 0.83 -0.1 5,099,993 + +0.0 5,099,993 + +0.1 5,099,994 - +0.2 5,100,285 + ABID97_RS24635 0.89 +0.1 5,100,286 - ABID97_RS24635 0.89 +0.0 5,100,300 + +1.6 5,100,300 + -0.0 5,100,300 + -1.2 5,100,301 - -0.9 5,100,410 + +0.6 5,100,450 + +0.1 5,100,450 + +1.1 5,100,451 - -1.6 5,100,454 + -0.8 5,100,455 - -0.2 5,100,455 - -0.6 5,100,455 - -0.2 5,100,478 + +0.3 5,100,479 - -0.6 5,100,479 - +0.2 5,100,479 - -0.7 5,100,480 + +0.3 5,100,480 + +0.6 5,100,480 + -1.9 5,100,663 - ABID97_RS24640 0.29 -0.0
Or see this region's nucleotide sequence