Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS23190 and ABID97_RS23195 are separated by 4 nucleotides ABID97_RS23195 and ABID97_RS23200 are separated by 177 nucleotides ABID97_RS23200 and ABID97_RS23205 are separated by 56 nucleotides ABID97_RS23205 and ABID97_RS23210 are separated by 37 nucleotides
ABID97_RS23190: ABID97_RS23190 - STAS domain-containing protein, at 4,793,624 to 4,793,896
_RS23190
ABID97_RS23195: ABID97_RS23195 - ABC transporter substrate-binding protein, at 4,793,901 to 4,794,560
_RS23195
ABID97_RS23200: ABID97_RS23200 - VacJ family lipoprotein, at 4,794,738 to 4,795,424
_RS23200
ABID97_RS23205: ABID97_RS23205 - outer membrane lipid asymmetry maintenance protein MlaD, at 4,795,481 to 4,795,975
_RS23205
ABID97_RS23210: ABID97_RS23210 - lipid asymmetry maintenance ABC transporter permease subunit MlaE, at 4,796,013 to 4,796,795
_RS23210
Position (kb) 4794
4795
4796 Strain fitness (log2 ratio) -2
-1
0
1 at 4793.810 kb on - strand, within ABID97_RS23190 at 4793.810 kb on - strand, within ABID97_RS23190 at 4793.998 kb on + strand, within ABID97_RS23195 at 4793.998 kb on + strand, within ABID97_RS23195 at 4793.999 kb on - strand, within ABID97_RS23195 at 4794.037 kb on + strand, within ABID97_RS23195 at 4794.037 kb on + strand, within ABID97_RS23195 at 4794.037 kb on + strand, within ABID97_RS23195 at 4794.037 kb on + strand, within ABID97_RS23195 at 4794.038 kb on - strand, within ABID97_RS23195 at 4794.038 kb on - strand, within ABID97_RS23195 at 4794.211 kb on + strand, within ABID97_RS23195 at 4794.212 kb on - strand, within ABID97_RS23195 at 4794.212 kb on - strand, within ABID97_RS23195 at 4794.212 kb on - strand, within ABID97_RS23195 at 4794.517 kb on - strand at 4794.517 kb on - strand at 4794.586 kb on + strand at 4794.586 kb on + strand at 4794.739 kb on + strand at 4794.739 kb on + strand at 4794.740 kb on - strand at 4794.776 kb on - strand at 4794.802 kb on + strand at 4794.823 kb on + strand, within ABID97_RS23200 at 4794.823 kb on + strand, within ABID97_RS23200 at 4794.824 kb on - strand, within ABID97_RS23200 at 4794.824 kb on - strand, within ABID97_RS23200 at 4794.824 kb on - strand, within ABID97_RS23200 at 4794.868 kb on + strand, within ABID97_RS23200 at 4794.868 kb on + strand, within ABID97_RS23200 at 4795.018 kb on + strand, within ABID97_RS23200 at 4795.018 kb on + strand, within ABID97_RS23200 at 4795.018 kb on + strand, within ABID97_RS23200 at 4795.019 kb on - strand, within ABID97_RS23200 at 4795.019 kb on - strand, within ABID97_RS23200 at 4795.273 kb on + strand, within ABID97_RS23200 at 4795.273 kb on + strand, within ABID97_RS23200 at 4795.274 kb on - strand, within ABID97_RS23200 at 4795.443 kb on + strand at 4795.516 kb on + strand at 4795.516 kb on + strand at 4795.539 kb on + strand, within ABID97_RS23205 at 4795.540 kb on - strand, within ABID97_RS23205 at 4795.647 kb on + strand, within ABID97_RS23205 at 4795.647 kb on + strand, within ABID97_RS23205 at 4795.648 kb on - strand, within ABID97_RS23205 at 4795.648 kb on - strand, within ABID97_RS23205 at 4795.857 kb on + strand, within ABID97_RS23205 at 4795.858 kb on - strand, within ABID97_RS23205 at 4795.858 kb on - strand, within ABID97_RS23205 at 4795.858 kb on - strand, within ABID97_RS23205 at 4795.952 kb on + strand at 4795.952 kb on + strand at 4795.952 kb on + strand at 4795.952 kb on + strand at 4795.952 kb on + strand at 4795.952 kb on + strand at 4795.952 kb on + strand at 4795.953 kb on - strand at 4795.953 kb on - strand at 4795.953 kb on - strand at 4795.953 kb on - strand at 4795.953 kb on - strand at 4795.953 kb on - strand at 4795.953 kb on - strand at 4795.953 kb on - strand at 4795.953 kb on - strand at 4795.953 kb on - strand at 4795.953 kb on - strand at 4795.953 kb on - strand at 4795.953 kb on - strand at 4795.953 kb on - strand at 4795.961 kb on - strand at 4795.989 kb on + strand at 4795.989 kb on + strand at 4796.019 kb on - strand at 4796.284 kb on + strand, within ABID97_RS23210 at 4796.285 kb on - strand, within ABID97_RS23210 at 4796.285 kb on - strand, within ABID97_RS23210 at 4796.285 kb on - strand, within ABID97_RS23210
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 4,793,810 - ABID97_RS23190 0.68 +0.2 4,793,810 - ABID97_RS23190 0.68 +1.2 4,793,998 + ABID97_RS23195 0.15 -0.1 4,793,998 + ABID97_RS23195 0.15 -0.3 4,793,999 - ABID97_RS23195 0.15 +0.8 4,794,037 + ABID97_RS23195 0.21 -1.4 4,794,037 + ABID97_RS23195 0.21 +1.2 4,794,037 + ABID97_RS23195 0.21 +0.4 4,794,037 + ABID97_RS23195 0.21 -0.3 4,794,038 - ABID97_RS23195 0.21 -0.1 4,794,038 - ABID97_RS23195 0.21 -1.5 4,794,211 + ABID97_RS23195 0.47 -0.0 4,794,212 - ABID97_RS23195 0.47 -0.0 4,794,212 - ABID97_RS23195 0.47 +0.9 4,794,212 - ABID97_RS23195 0.47 -0.6 4,794,517 - +1.2 4,794,517 - +0.6 4,794,586 + +0.4 4,794,586 + -0.1 4,794,739 + -0.1 4,794,739 + -0.0 4,794,740 - +0.6 4,794,776 - +1.6 4,794,802 + -0.0 4,794,823 + ABID97_RS23200 0.12 -0.4 4,794,823 + ABID97_RS23200 0.12 +0.5 4,794,824 - ABID97_RS23200 0.13 +0.5 4,794,824 - ABID97_RS23200 0.13 -0.5 4,794,824 - ABID97_RS23200 0.13 -1.6 4,794,868 + ABID97_RS23200 0.19 -1.6 4,794,868 + ABID97_RS23200 0.19 +1.0 4,795,018 + ABID97_RS23200 0.41 -0.0 4,795,018 + ABID97_RS23200 0.41 +0.9 4,795,018 + ABID97_RS23200 0.41 +0.1 4,795,019 - ABID97_RS23200 0.41 +0.4 4,795,019 - ABID97_RS23200 0.41 -0.3 4,795,273 + ABID97_RS23200 0.78 -0.0 4,795,273 + ABID97_RS23200 0.78 +0.2 4,795,274 - ABID97_RS23200 0.78 +0.3 4,795,443 + +1.7 4,795,516 + -0.3 4,795,516 + +0.6 4,795,539 + ABID97_RS23205 0.12 +0.6 4,795,540 - ABID97_RS23205 0.12 +0.7 4,795,647 + ABID97_RS23205 0.34 +1.0 4,795,647 + ABID97_RS23205 0.34 +0.4 4,795,648 - ABID97_RS23205 0.34 +0.4 4,795,648 - ABID97_RS23205 0.34 +0.3 4,795,857 + ABID97_RS23205 0.76 +0.1 4,795,858 - ABID97_RS23205 0.76 +0.4 4,795,858 - ABID97_RS23205 0.76 +0.1 4,795,858 - ABID97_RS23205 0.76 +0.2 4,795,952 + -0.5 4,795,952 + -1.0 4,795,952 + -0.0 4,795,952 + +0.1 4,795,952 + -0.2 4,795,952 + +0.5 4,795,952 + -0.2 4,795,953 - +0.8 4,795,953 - -0.4 4,795,953 - +0.0 4,795,953 - +0.1 4,795,953 - +0.4 4,795,953 - -0.2 4,795,953 - -0.6 4,795,953 - +0.0 4,795,953 - -0.2 4,795,953 - +0.6 4,795,953 - +0.3 4,795,953 - -0.0 4,795,953 - +0.9 4,795,953 - +0.8 4,795,961 - +0.2 4,795,989 + -1.3 4,795,989 + +0.1 4,796,019 - +0.7 4,796,284 + ABID97_RS23210 0.35 +0.4 4,796,285 - ABID97_RS23210 0.35 -0.0 4,796,285 - ABID97_RS23210 0.35 -2.3 4,796,285 - ABID97_RS23210 0.35 -1.0
Or see this region's nucleotide sequence