Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20180 and ABID97_RS20185 are separated by 55 nucleotides ABID97_RS20185 and ABID97_RS20190 overlap by 4 nucleotides ABID97_RS20190 and ABID97_RS20195 are separated by 41 nucleotides
ABID97_RS20180: ABID97_RS20180 - CTP synthase, at 4,168,304 to 4,169,983
_RS20180
ABID97_RS20185: ABID97_RS20185 - 3-deoxy-8-phosphooctulonate synthase, at 4,170,039 to 4,170,896
_RS20185
ABID97_RS20190: ABID97_RS20190 - DUF1330 domain-containing protein, at 4,170,893 to 4,171,183
_RS20190
ABID97_RS20195: ABID97_RS20195 - phosphopyruvate hydratase, at 4,171,225 to 4,172,508
_RS20195
Position (kb) 4170
4171
4172 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4170.038 kb on + strand at 4170.953 kb on + strand, within ABID97_RS20190 at 4170.954 kb on - strand, within ABID97_RS20190 at 4170.954 kb on - strand, within ABID97_RS20190 at 4170.954 kb on - strand at 4170.954 kb on - strand, within ABID97_RS20190 at 4171.100 kb on + strand, within ABID97_RS20190 at 4171.100 kb on + strand, within ABID97_RS20190 at 4171.101 kb on - strand, within ABID97_RS20190 at 4171.101 kb on - strand, within ABID97_RS20190 at 4171.101 kb on - strand, within ABID97_RS20190 at 4171.101 kb on - strand, within ABID97_RS20190 at 4171.116 kb on - strand, within ABID97_RS20190
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 4,170,038 + -1.2 4,170,953 + ABID97_RS20190 0.21 +0.2 4,170,954 - ABID97_RS20190 0.21 -2.1 4,170,954 - ABID97_RS20190 0.21 -0.6 4,170,954 - -0.3 4,170,954 - ABID97_RS20190 0.21 -2.4 4,171,100 + ABID97_RS20190 0.71 -0.7 4,171,100 + ABID97_RS20190 0.71 +0.8 4,171,101 - ABID97_RS20190 0.71 -0.8 4,171,101 - ABID97_RS20190 0.71 -0.7 4,171,101 - ABID97_RS20190 0.71 -1.1 4,171,101 - ABID97_RS20190 0.71 -0.7 4,171,116 - ABID97_RS20190 0.77 +2.3
Or see this region's nucleotide sequence