Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS18930 and ABID97_RS18935 are separated by 207 nucleotides ABID97_RS18935 and ABID97_RS18940 are separated by 115 nucleotides ABID97_RS18940 and ABID97_RS18945 are separated by 91 nucleotides ABID97_RS18945 and ABID97_RS18950 are separated by 19 nucleotides
ABID97_RS18930: ABID97_RS18930 - helix-turn-helix transcriptional regulator, at 3,898,969 to 3,899,820
_RS18930
ABID97_RS18935: ABID97_RS18935 - hypothetical protein, at 3,900,028 to 3,900,615
_RS18935
ABID97_RS18940: ABID97_RS18940 - Crp/Fnr family transcriptional regulator, at 3,900,731 to 3,901,483
_RS18940
ABID97_RS18945: ABID97_RS18945 - ABC transporter ATP-binding protein, at 3,901,575 to 3,902,294
_RS18945
ABID97_RS18950: ABID97_RS18950 - ABC transporter ATP-binding protein, at 3,902,314 to 3,903,141
_RS18950
Position (kb) 3900
3901
3902 Strain fitness (log2 ratio) -1
0
1 at 3899.881 kb on + strand at 3900.112 kb on - strand, within ABID97_RS18935 at 3900.122 kb on - strand, within ABID97_RS18935 at 3900.122 kb on - strand, within ABID97_RS18935 at 3900.329 kb on + strand, within ABID97_RS18935 at 3900.359 kb on + strand, within ABID97_RS18935 at 3900.486 kb on - strand, within ABID97_RS18935 at 3900.830 kb on - strand, within ABID97_RS18940 at 3902.002 kb on - strand, within ABID97_RS18945 at 3902.002 kb on - strand, within ABID97_RS18945 at 3902.405 kb on + strand, within ABID97_RS18950 at 3902.405 kb on + strand, within ABID97_RS18950 at 3902.406 kb on - strand, within ABID97_RS18950
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 3,899,881 + +0.2 3,900,112 - ABID97_RS18935 0.14 +1.7 3,900,122 - ABID97_RS18935 0.16 -0.4 3,900,122 - ABID97_RS18935 0.16 -0.3 3,900,329 + ABID97_RS18935 0.51 -0.6 3,900,359 + ABID97_RS18935 0.56 -0.6 3,900,486 - ABID97_RS18935 0.78 -0.0 3,900,830 - ABID97_RS18940 0.13 +0.1 3,902,002 - ABID97_RS18945 0.59 +0.2 3,902,002 - ABID97_RS18945 0.59 +0.7 3,902,405 + ABID97_RS18950 0.11 +0.9 3,902,405 + ABID97_RS18950 0.11 -0.3 3,902,406 - ABID97_RS18950 0.11 -0.4
Or see this region's nucleotide sequence