Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12260

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12245 and ABID97_RS12250 are separated by 5 nucleotidesABID97_RS12250 and ABID97_RS12255 are separated by 113 nucleotidesABID97_RS12255 and ABID97_RS12260 are separated by 145 nucleotidesABID97_RS12260 and ABID97_RS12265 are separated by 24 nucleotidesABID97_RS12265 and ABID97_RS12270 are separated by 72 nucleotides ABID97_RS12245: ABID97_RS12245 - hypothetical protein, at 2,543,368 to 2,543,628 _RS12245 ABID97_RS12250: ABID97_RS12250 - hypothetical protein, at 2,543,634 to 2,543,900 _RS12250 ABID97_RS12255: ABID97_RS12255 - PRC-barrel domain-containing protein, at 2,544,014 to 2,544,352 _RS12255 ABID97_RS12260: ABID97_RS12260 - hypothetical protein, at 2,544,498 to 2,546,090 _RS12260 ABID97_RS12265: ABID97_RS12265 - helix-turn-helix domain-containing protein, at 2,546,115 to 2,546,573 _RS12265 ABID97_RS12270: ABID97_RS12270 - class I SAM-dependent methyltransferase, at 2,546,646 to 2,547,491 _RS12270 Position (kb) 2544 2545 2546 2547Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2543.527 kb on + strand, within ABID97_RS12245at 2543.527 kb on + strand, within ABID97_RS12245at 2543.528 kb on - strand, within ABID97_RS12245at 2543.528 kb on - strand, within ABID97_RS12245at 2543.582 kb on + strand, within ABID97_RS12245at 2543.606 kb on - strandat 2543.626 kb on + strandat 2543.848 kb on + strand, within ABID97_RS12250at 2544.028 kb on - strandat 2544.048 kb on + strand, within ABID97_RS12255at 2544.049 kb on - strand, within ABID97_RS12255at 2544.130 kb on - strand, within ABID97_RS12255at 2544.130 kb on - strand, within ABID97_RS12255at 2544.298 kb on - strand, within ABID97_RS12255at 2544.465 kb on + strandat 2544.465 kb on + strandat 2544.796 kb on + strand, within ABID97_RS12260at 2544.883 kb on + strand, within ABID97_RS12260at 2544.961 kb on - strand, within ABID97_RS12260at 2545.327 kb on + strand, within ABID97_RS12260at 2545.328 kb on - strand, within ABID97_RS12260at 2545.328 kb on - strand, within ABID97_RS12260at 2545.328 kb on - strand, within ABID97_RS12260at 2545.876 kb on + strand, within ABID97_RS12260at 2545.876 kb on + strand, within ABID97_RS12260at 2545.877 kb on - strand, within ABID97_RS12260at 2545.877 kb on - strand, within ABID97_RS12260at 2545.877 kb on - strand, within ABID97_RS12260at 2545.877 kb on - strand, within ABID97_RS12260at 2545.877 kb on - strand, within ABID97_RS12260at 2545.877 kb on - strand, within ABID97_RS12260at 2546.504 kb on - strand, within ABID97_RS12265at 2546.504 kb on - strand, within ABID97_RS12265at 2546.609 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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2,543,527 + ABID97_RS12245 0.61 +0.5
2,543,527 + ABID97_RS12245 0.61 +0.4
2,543,528 - ABID97_RS12245 0.61 -1.8
2,543,528 - ABID97_RS12245 0.61 -1.6
2,543,582 + ABID97_RS12245 0.82 +0.6
2,543,606 - -2.8
2,543,626 + +0.8
2,543,848 + ABID97_RS12250 0.80 -0.2
2,544,028 - -1.9
2,544,048 + ABID97_RS12255 0.10 -0.1
2,544,049 - ABID97_RS12255 0.10 -2.9
2,544,130 - ABID97_RS12255 0.34 -1.3
2,544,130 - ABID97_RS12255 0.34 -0.6
2,544,298 - ABID97_RS12255 0.84 +2.4
2,544,465 + -0.6
2,544,465 + +0.1
2,544,796 + ABID97_RS12260 0.19 +0.6
2,544,883 + ABID97_RS12260 0.24 -0.4
2,544,961 - ABID97_RS12260 0.29 -0.4
2,545,327 + ABID97_RS12260 0.52 -0.3
2,545,328 - ABID97_RS12260 0.52 -1.5
2,545,328 - ABID97_RS12260 0.52 -0.5
2,545,328 - ABID97_RS12260 0.52 -0.9
2,545,876 + ABID97_RS12260 0.87 +0.9
2,545,876 + ABID97_RS12260 0.87 -0.4
2,545,877 - ABID97_RS12260 0.87 -3.0
2,545,877 - ABID97_RS12260 0.87 -0.1
2,545,877 - ABID97_RS12260 0.87 +0.4
2,545,877 - ABID97_RS12260 0.87 +0.3
2,545,877 - ABID97_RS12260 0.87 -0.5
2,545,877 - ABID97_RS12260 0.87 -0.3
2,546,504 - ABID97_RS12265 0.85 -0.6
2,546,504 - ABID97_RS12265 0.85 -0.8
2,546,609 + +0.5

Or see this region's nucleotide sequence