Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS07985 and ABID97_RS07990 are separated by 10 nucleotides ABID97_RS07990 and ABID97_RS07995 are separated by 7 nucleotides
ABID97_RS07985: ABID97_RS07985 - aspartate carbamoyltransferase, at 1,678,438 to 1,679,715
_RS07985
ABID97_RS07990: ABID97_RS07990 - TIGR02117 family protein, at 1,679,726 to 1,680,400
_RS07990
ABID97_RS07995: ABID97_RS07995 - DNA polymerase IV, at 1,680,408 to 1,681,655
_RS07995
Position (kb) 1679
1680
1681 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 1678.942 kb on + strand, within ABID97_RS07985 at 1678.942 kb on + strand, within ABID97_RS07985 at 1678.943 kb on - strand, within ABID97_RS07985 at 1678.970 kb on - strand, within ABID97_RS07985 at 1678.970 kb on - strand, within ABID97_RS07985 at 1679.101 kb on + strand, within ABID97_RS07985 at 1679.101 kb on + strand, within ABID97_RS07985 at 1679.102 kb on - strand, within ABID97_RS07985 at 1679.102 kb on - strand, within ABID97_RS07985 at 1679.102 kb on - strand, within ABID97_RS07985 at 1679.180 kb on - strand, within ABID97_RS07985 at 1679.180 kb on - strand, within ABID97_RS07985 at 1679.222 kb on - strand, within ABID97_RS07985 at 1679.275 kb on + strand, within ABID97_RS07985 at 1679.362 kb on + strand, within ABID97_RS07985 at 1679.363 kb on - strand, within ABID97_RS07985 at 1679.413 kb on + strand, within ABID97_RS07985 at 1679.869 kb on - strand, within ABID97_RS07990 at 1679.869 kb on - strand, within ABID97_RS07990 at 1679.869 kb on - strand, within ABID97_RS07990 at 1679.961 kb on + strand, within ABID97_RS07990 at 1679.961 kb on + strand, within ABID97_RS07990 at 1679.962 kb on - strand, within ABID97_RS07990 at 1680.021 kb on + strand, within ABID97_RS07990 at 1680.022 kb on - strand, within ABID97_RS07990 at 1680.111 kb on + strand, within ABID97_RS07990 at 1680.112 kb on - strand, within ABID97_RS07990 at 1680.337 kb on - strand at 1680.337 kb on - strand at 1680.653 kb on - strand, within ABID97_RS07995 at 1680.686 kb on - strand, within ABID97_RS07995 at 1680.686 kb on - strand, within ABID97_RS07995 at 1681.039 kb on + strand, within ABID97_RS07995 at 1681.219 kb on + strand, within ABID97_RS07995 at 1681.219 kb on + strand, within ABID97_RS07995 at 1681.219 kb on + strand, within ABID97_RS07995 at 1681.219 kb on + strand, within ABID97_RS07995 at 1681.219 kb on + strand, within ABID97_RS07995 at 1681.219 kb on + strand, within ABID97_RS07995 at 1681.219 kb on + strand, within ABID97_RS07995 at 1681.220 kb on - strand, within ABID97_RS07995 at 1681.220 kb on - strand, within ABID97_RS07995 at 1681.291 kb on + strand, within ABID97_RS07995
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 1,678,942 + ABID97_RS07985 0.39 +0.7 1,678,942 + ABID97_RS07985 0.39 +0.5 1,678,943 - ABID97_RS07985 0.40 +1.2 1,678,970 - ABID97_RS07985 0.42 +0.7 1,678,970 - ABID97_RS07985 0.42 -0.6 1,679,101 + ABID97_RS07985 0.52 +0.2 1,679,101 + ABID97_RS07985 0.52 -0.3 1,679,102 - ABID97_RS07985 0.52 -0.5 1,679,102 - ABID97_RS07985 0.52 +0.9 1,679,102 - ABID97_RS07985 0.52 -0.3 1,679,180 - ABID97_RS07985 0.58 -0.2 1,679,180 - ABID97_RS07985 0.58 +0.5 1,679,222 - ABID97_RS07985 0.61 -0.3 1,679,275 + ABID97_RS07985 0.65 +0.5 1,679,362 + ABID97_RS07985 0.72 -0.3 1,679,363 - ABID97_RS07985 0.72 +1.0 1,679,413 + ABID97_RS07985 0.76 +4.2 1,679,869 - ABID97_RS07990 0.21 +1.3 1,679,869 - ABID97_RS07990 0.21 -0.0 1,679,869 - ABID97_RS07990 0.21 -0.1 1,679,961 + ABID97_RS07990 0.35 -0.2 1,679,961 + ABID97_RS07990 0.35 +0.9 1,679,962 - ABID97_RS07990 0.35 +0.8 1,680,021 + ABID97_RS07990 0.44 -0.2 1,680,022 - ABID97_RS07990 0.44 +1.1 1,680,111 + ABID97_RS07990 0.57 -1.7 1,680,112 - ABID97_RS07990 0.57 +2.3 1,680,337 - +0.6 1,680,337 - +0.3 1,680,653 - ABID97_RS07995 0.20 +0.6 1,680,686 - ABID97_RS07995 0.22 -0.4 1,680,686 - ABID97_RS07995 0.22 +1.3 1,681,039 + ABID97_RS07995 0.51 +0.3 1,681,219 + ABID97_RS07995 0.65 -0.2 1,681,219 + ABID97_RS07995 0.65 -0.0 1,681,219 + ABID97_RS07995 0.65 +0.9 1,681,219 + ABID97_RS07995 0.65 -0.1 1,681,219 + ABID97_RS07995 0.65 +0.7 1,681,219 + ABID97_RS07995 0.65 -0.0 1,681,219 + ABID97_RS07995 0.65 -0.1 1,681,220 - ABID97_RS07995 0.65 +0.4 1,681,220 - ABID97_RS07995 0.65 +0.2 1,681,291 + ABID97_RS07995 0.71 +0.3
Or see this region's nucleotide sequence