Strain Fitness in Variovorax sp. OAS795 around ABID97_RS04335

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS04330 and ABID97_RS04335 are separated by 493 nucleotidesABID97_RS04335 and ABID97_RS04340 are separated by 61 nucleotides ABID97_RS04330: ABID97_RS04330 - DMT family transporter, at 888,156 to 889,046 _RS04330 ABID97_RS04335: ABID97_RS04335 - sterol desaturase family protein, at 889,540 to 889,995 _RS04335 ABID97_RS04340: ABID97_RS04340 - excinuclease ABC subunit UvrA, at 890,057 to 893,173 _RS04340 Position (kb) 889 890Strain fitness (log2 ratio) -3 -2 -1 0 1at 888.589 kb on + strand, within ABID97_RS04330at 888.740 kb on - strand, within ABID97_RS04330at 889.264 kb on + strandat 889.265 kb on - strandat 889.291 kb on + strandat 889.291 kb on + strandat 889.292 kb on - strandat 889.292 kb on - strandat 889.436 kb on + strandat 889.436 kb on + strandat 889.436 kb on + strandat 889.592 kb on + strand, within ABID97_RS04335at 889.592 kb on + strand, within ABID97_RS04335at 889.593 kb on - strand, within ABID97_RS04335at 889.593 kb on - strand, within ABID97_RS04335at 889.593 kb on - strand, within ABID97_RS04335at 889.627 kb on + strand, within ABID97_RS04335at 889.627 kb on + strand, within ABID97_RS04335at 889.628 kb on - strand, within ABID97_RS04335at 889.628 kb on - strand, within ABID97_RS04335at 889.688 kb on + strand, within ABID97_RS04335at 889.688 kb on + strand, within ABID97_RS04335at 889.688 kb on + strand, within ABID97_RS04335at 889.689 kb on - strand, within ABID97_RS04335at 889.702 kb on + strand, within ABID97_RS04335at 889.703 kb on - strand, within ABID97_RS04335at 889.723 kb on + strand, within ABID97_RS04335at 889.723 kb on + strand, within ABID97_RS04335at 889.724 kb on - strand, within ABID97_RS04335at 889.724 kb on - strand, within ABID97_RS04335at 889.724 kb on - strand, within ABID97_RS04335at 889.738 kb on + strand, within ABID97_RS04335at 889.787 kb on - strand, within ABID97_RS04335at 889.787 kb on - strand, within ABID97_RS04335at 889.816 kb on + strand, within ABID97_RS04335at 889.817 kb on - strand, within ABID97_RS04335at 889.862 kb on - strand, within ABID97_RS04335at 889.958 kb on + strandat 889.959 kb on - strandat 890.319 kb on + strandat 890.319 kb on + strandat 890.319 kb on + strandat 890.319 kb on + strandat 890.319 kb on + strandat 890.320 kb on - strandat 890.421 kb on + strand, within ABID97_RS04340at 890.421 kb on + strand, within ABID97_RS04340at 890.541 kb on + strand, within ABID97_RS04340at 890.541 kb on + strand, within ABID97_RS04340at 890.542 kb on - strand, within ABID97_RS04340at 890.542 kb on - strand, within ABID97_RS04340at 890.542 kb on - strand, within ABID97_RS04340at 890.542 kb on - strand, within ABID97_RS04340at 890.568 kb on + strand, within ABID97_RS04340at 890.569 kb on - strand, within ABID97_RS04340at 890.569 kb on - strand, within ABID97_RS04340at 890.601 kb on + strand, within ABID97_RS04340at 890.601 kb on + strand, within ABID97_RS04340at 890.601 kb on + strand, within ABID97_RS04340at 890.601 kb on + strand, within ABID97_RS04340at 890.601 kb on + strand, within ABID97_RS04340at 890.601 kb on + strand, within ABID97_RS04340at 890.601 kb on + strand, within ABID97_RS04340at 890.601 kb on + strand, within ABID97_RS04340at 890.601 kb on + strand, within ABID97_RS04340at 890.601 kb on + strand, within ABID97_RS04340at 890.601 kb on + strand, within ABID97_RS04340at 890.601 kb on + strand, within ABID97_RS04340at 890.602 kb on - strand, within ABID97_RS04340at 890.602 kb on - strand, within ABID97_RS04340at 890.602 kb on - strand, within ABID97_RS04340at 890.602 kb on - strand, within ABID97_RS04340at 890.769 kb on + strand, within ABID97_RS04340at 890.769 kb on + strand, within ABID97_RS04340at 890.770 kb on - strand, within ABID97_RS04340at 890.770 kb on - strand, within ABID97_RS04340at 890.770 kb on - strand, within ABID97_RS04340at 890.889 kb on + strand, within ABID97_RS04340at 890.913 kb on + strand, within ABID97_RS04340

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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888,589 + ABID97_RS04330 0.49 -3.3
888,740 - ABID97_RS04330 0.66 -0.1
889,264 + +0.2
889,265 - -0.5
889,291 + +0.3
889,291 + +0.2
889,292 - +0.8
889,292 - +0.3
889,436 + +0.1
889,436 + +0.4
889,436 + +0.8
889,592 + ABID97_RS04335 0.11 +0.6
889,592 + ABID97_RS04335 0.11 -0.2
889,593 - ABID97_RS04335 0.12 -0.4
889,593 - ABID97_RS04335 0.12 -0.7
889,593 - ABID97_RS04335 0.12 +0.2
889,627 + ABID97_RS04335 0.19 -0.7
889,627 + ABID97_RS04335 0.19 +0.3
889,628 - ABID97_RS04335 0.19 -0.1
889,628 - ABID97_RS04335 0.19 -2.5
889,688 + ABID97_RS04335 0.32 +1.3
889,688 + ABID97_RS04335 0.32 -0.1
889,688 + ABID97_RS04335 0.32 +0.6
889,689 - ABID97_RS04335 0.33 -0.6
889,702 + ABID97_RS04335 0.36 +1.3
889,703 - ABID97_RS04335 0.36 -0.4
889,723 + ABID97_RS04335 0.40 +0.2
889,723 + ABID97_RS04335 0.40 +0.3
889,724 - ABID97_RS04335 0.40 -1.4
889,724 - ABID97_RS04335 0.40 -0.8
889,724 - ABID97_RS04335 0.40 +0.3
889,738 + ABID97_RS04335 0.43 -0.7
889,787 - ABID97_RS04335 0.54 -1.1
889,787 - ABID97_RS04335 0.54 -0.6
889,816 + ABID97_RS04335 0.61 -1.2
889,817 - ABID97_RS04335 0.61 +0.4
889,862 - ABID97_RS04335 0.71 -0.7
889,958 + -0.8
889,959 - -2.2
890,319 + -1.6
890,319 + -2.2
890,319 + -0.2
890,319 + -1.3
890,319 + +0.1
890,320 - -0.1
890,421 + ABID97_RS04340 0.12 -1.1
890,421 + ABID97_RS04340 0.12 -0.6
890,541 + ABID97_RS04340 0.16 -1.4
890,541 + ABID97_RS04340 0.16 -2.8
890,542 - ABID97_RS04340 0.16 -0.9
890,542 - ABID97_RS04340 0.16 +0.1
890,542 - ABID97_RS04340 0.16 +0.1
890,542 - ABID97_RS04340 0.16 -1.3
890,568 + ABID97_RS04340 0.16 -1.0
890,569 - ABID97_RS04340 0.16 +0.2
890,569 - ABID97_RS04340 0.16 +0.3
890,601 + ABID97_RS04340 0.17 -0.8
890,601 + ABID97_RS04340 0.17 -1.3
890,601 + ABID97_RS04340 0.17 -1.0
890,601 + ABID97_RS04340 0.17 -0.2
890,601 + ABID97_RS04340 0.17 -0.2
890,601 + ABID97_RS04340 0.17 -1.7
890,601 + ABID97_RS04340 0.17 +0.7
890,601 + ABID97_RS04340 0.17 -1.1
890,601 + ABID97_RS04340 0.17 -0.6
890,601 + ABID97_RS04340 0.17 -0.8
890,601 + ABID97_RS04340 0.17 -2.4
890,601 + ABID97_RS04340 0.17 -0.9
890,602 - ABID97_RS04340 0.17 +0.0
890,602 - ABID97_RS04340 0.17 -0.4
890,602 - ABID97_RS04340 0.17 +0.3
890,602 - ABID97_RS04340 0.17 +0.7
890,769 + ABID97_RS04340 0.23 -1.3
890,769 + ABID97_RS04340 0.23 +1.3
890,770 - ABID97_RS04340 0.23 -0.7
890,770 - ABID97_RS04340 0.23 -0.7
890,770 - ABID97_RS04340 0.23 +0.4
890,889 + ABID97_RS04340 0.27 +0.1
890,913 + ABID97_RS04340 0.27 -1.2

Or see this region's nucleotide sequence