Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02935 and ABID97_RS02940 are separated by 75 nucleotides ABID97_RS02940 and ABID97_RS02945 are separated by 206 nucleotides ABID97_RS02945 and ABID97_RS02950 overlap by 4 nucleotides
ABID97_RS02935: ABID97_RS02935 - CsgG/HfaB family protein, at 598,251 to 599,147
_RS02935
ABID97_RS02940: ABID97_RS02940 - FAD-linked oxidase C-terminal domain-containing protein, at 599,223 to 600,647
_RS02940
ABID97_RS02945: ABID97_RS02945 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 600,854 to 601,465
_RS02945
ABID97_RS02950: ABID97_RS02950 - hypothetical protein, at 601,462 to 601,824
_RS02950
Position (kb) 599
600
601 Strain fitness (log2 ratio) -2
-1
0
1
2 at 598.230 kb on - strand at 598.230 kb on - strand at 598.473 kb on + strand, within ABID97_RS02935 at 598.473 kb on + strand, within ABID97_RS02935 at 598.473 kb on + strand, within ABID97_RS02935 at 598.474 kb on - strand, within ABID97_RS02935 at 598.941 kb on + strand, within ABID97_RS02935 at 598.942 kb on - strand, within ABID97_RS02935 at 599.022 kb on + strand, within ABID97_RS02935 at 599.022 kb on + strand, within ABID97_RS02935 at 599.022 kb on + strand, within ABID97_RS02935 at 599.022 kb on + strand, within ABID97_RS02935 at 599.022 kb on + strand, within ABID97_RS02935 at 599.022 kb on + strand, within ABID97_RS02935 at 599.022 kb on + strand, within ABID97_RS02935 at 599.023 kb on - strand, within ABID97_RS02935 at 599.023 kb on - strand, within ABID97_RS02935 at 599.023 kb on - strand, within ABID97_RS02935 at 599.023 kb on - strand, within ABID97_RS02935 at 599.023 kb on - strand, within ABID97_RS02935 at 599.023 kb on - strand, within ABID97_RS02935 at 599.023 kb on - strand, within ABID97_RS02935 at 599.023 kb on - strand, within ABID97_RS02935 at 599.023 kb on - strand, within ABID97_RS02935 at 599.023 kb on - strand, within ABID97_RS02935 at 599.023 kb on - strand, within ABID97_RS02935 at 599.023 kb on - strand, within ABID97_RS02935 at 599.106 kb on + strand at 599.106 kb on + strand at 599.106 kb on + strand at 599.106 kb on + strand at 599.106 kb on + strand at 599.107 kb on - strand at 599.107 kb on - strand at 599.107 kb on - strand at 599.107 kb on - strand at 599.107 kb on - strand at 599.145 kb on + strand at 599.145 kb on + strand at 599.145 kb on + strand at 599.145 kb on + strand at 599.145 kb on + strand at 599.146 kb on - strand at 599.146 kb on - strand at 599.146 kb on - strand at 599.146 kb on - strand at 599.146 kb on - strand at 599.506 kb on + strand, within ABID97_RS02940 at 599.506 kb on + strand, within ABID97_RS02940 at 599.506 kb on + strand, within ABID97_RS02940 at 599.507 kb on - strand, within ABID97_RS02940 at 599.507 kb on - strand, within ABID97_RS02940 at 599.507 kb on - strand, within ABID97_RS02940 at 599.507 kb on - strand, within ABID97_RS02940 at 599.507 kb on - strand, within ABID97_RS02940 at 599.507 kb on - strand, within ABID97_RS02940 at 599.632 kb on + strand, within ABID97_RS02940 at 599.632 kb on + strand, within ABID97_RS02940 at 599.633 kb on - strand, within ABID97_RS02940 at 599.633 kb on - strand, within ABID97_RS02940 at 599.815 kb on + strand, within ABID97_RS02940 at 599.815 kb on + strand, within ABID97_RS02940 at 599.815 kb on + strand, within ABID97_RS02940 at 599.965 kb on + strand, within ABID97_RS02940 at 599.965 kb on + strand, within ABID97_RS02940 at 599.965 kb on + strand, within ABID97_RS02940 at 599.966 kb on - strand, within ABID97_RS02940 at 599.966 kb on - strand, within ABID97_RS02940 at 599.966 kb on - strand, within ABID97_RS02940 at 599.966 kb on - strand, within ABID97_RS02940 at 599.966 kb on - strand, within ABID97_RS02940 at 600.715 kb on + strand at 600.715 kb on + strand at 600.716 kb on - strand at 600.716 kb on - strand at 600.716 kb on - strand at 600.716 kb on - strand at 600.744 kb on - strand at 600.792 kb on + strand at 600.792 kb on + strand at 600.819 kb on + strand at 600.820 kb on - strand at 601.304 kb on + strand, within ABID97_RS02945 at 601.304 kb on + strand, within ABID97_RS02945 at 601.304 kb on + strand, within ABID97_RS02945 at 601.304 kb on + strand, within ABID97_RS02945 at 601.305 kb on - strand, within ABID97_RS02945 at 601.305 kb on - strand, within ABID97_RS02945 at 601.380 kb on - strand, within ABID97_RS02945
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 598,230 - -1.0 598,230 - -0.1 598,473 + ABID97_RS02935 0.25 +0.2 598,473 + ABID97_RS02935 0.25 -0.3 598,473 + ABID97_RS02935 0.25 -1.9 598,474 - ABID97_RS02935 0.25 +0.2 598,941 + ABID97_RS02935 0.77 +2.2 598,942 - ABID97_RS02935 0.77 -0.6 599,022 + ABID97_RS02935 0.86 +0.2 599,022 + ABID97_RS02935 0.86 +0.3 599,022 + ABID97_RS02935 0.86 -0.1 599,022 + ABID97_RS02935 0.86 +0.5 599,022 + ABID97_RS02935 0.86 -1.3 599,022 + ABID97_RS02935 0.86 -0.6 599,022 + ABID97_RS02935 0.86 +0.5 599,023 - ABID97_RS02935 0.86 -0.4 599,023 - ABID97_RS02935 0.86 -0.2 599,023 - ABID97_RS02935 0.86 -0.7 599,023 - ABID97_RS02935 0.86 -0.6 599,023 - ABID97_RS02935 0.86 +0.7 599,023 - ABID97_RS02935 0.86 -0.2 599,023 - ABID97_RS02935 0.86 -0.4 599,023 - ABID97_RS02935 0.86 -0.1 599,023 - ABID97_RS02935 0.86 +1.2 599,023 - ABID97_RS02935 0.86 +0.1 599,023 - ABID97_RS02935 0.86 -0.5 599,023 - ABID97_RS02935 0.86 +1.2 599,106 + -0.6 599,106 + -0.9 599,106 + +0.3 599,106 + +0.3 599,106 + -0.5 599,107 - +0.4 599,107 - -1.5 599,107 - -0.5 599,107 - -1.6 599,107 - -0.6 599,145 + +0.5 599,145 + +1.8 599,145 + +0.7 599,145 + +0.3 599,145 + +0.6 599,146 - +1.5 599,146 - +0.3 599,146 - -0.3 599,146 - -1.0 599,146 - -0.1 599,506 + ABID97_RS02940 0.20 +2.2 599,506 + ABID97_RS02940 0.20 -1.3 599,506 + ABID97_RS02940 0.20 +0.9 599,507 - ABID97_RS02940 0.20 -0.5 599,507 - ABID97_RS02940 0.20 -0.2 599,507 - ABID97_RS02940 0.20 -0.1 599,507 - ABID97_RS02940 0.20 -0.4 599,507 - ABID97_RS02940 0.20 -0.1 599,507 - ABID97_RS02940 0.20 +0.1 599,632 + ABID97_RS02940 0.29 -1.1 599,632 + ABID97_RS02940 0.29 +0.1 599,633 - ABID97_RS02940 0.29 -0.5 599,633 - ABID97_RS02940 0.29 -0.5 599,815 + ABID97_RS02940 0.42 +2.0 599,815 + ABID97_RS02940 0.42 +0.7 599,815 + ABID97_RS02940 0.42 -0.8 599,965 + ABID97_RS02940 0.52 +1.1 599,965 + ABID97_RS02940 0.52 +0.3 599,965 + ABID97_RS02940 0.52 -0.2 599,966 - ABID97_RS02940 0.52 +0.0 599,966 - ABID97_RS02940 0.52 -0.4 599,966 - ABID97_RS02940 0.52 -1.3 599,966 - ABID97_RS02940 0.52 +0.4 599,966 - ABID97_RS02940 0.52 -0.5 600,715 + +0.2 600,715 + -1.9 600,716 - -0.5 600,716 - -0.8 600,716 - +0.4 600,716 - -0.6 600,744 - +1.2 600,792 + +0.3 600,792 + -0.5 600,819 + -0.4 600,820 - -0.3 601,304 + ABID97_RS02945 0.74 -0.8 601,304 + ABID97_RS02945 0.74 -0.2 601,304 + ABID97_RS02945 0.74 +0.7 601,304 + ABID97_RS02945 0.74 -0.4 601,305 - ABID97_RS02945 0.74 +1.0 601,305 - ABID97_RS02945 0.74 -0.8 601,380 - ABID97_RS02945 0.86 +1.0
Or see this region's nucleotide sequence