Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01895 and ABID97_RS01900 are separated by 143 nucleotides ABID97_RS01900 and ABID97_RS01905 are separated by 20 nucleotides ABID97_RS01905 and ABID97_RS01910 overlap by 4 nucleotides ABID97_RS01910 and ABID97_RS01915 overlap by 8 nucleotides
ABID97_RS01895: ABID97_RS01895 - ABC transporter substrate-binding protein, at 375,442 to 376,470
_RS01895
ABID97_RS01900: ABID97_RS01900 - NAD(P)H-dependent oxidoreductase, at 376,614 to 377,204
_RS01900
ABID97_RS01905: ABID97_RS01905 - PDR/VanB family oxidoreductase, at 377,225 to 378,196
_RS01905
ABID97_RS01910: ABID97_RS01910 - TetR family transcriptional regulator C-terminal domain-containing protein, at 378,193 to 378,843
_RS01910
ABID97_RS01915: ABID97_RS01915 - RidA family protein, at 378,836 to 379,303
_RS01915
Position (kb) 377
378
379 Strain fitness (log2 ratio) -1
0
1
2 at 376.346 kb on - strand, within ABID97_RS01895 at 376.372 kb on + strand at 376.373 kb on - strand at 376.729 kb on - strand, within ABID97_RS01900 at 376.776 kb on + strand, within ABID97_RS01900 at 377.203 kb on - strand at 377.203 kb on - strand at 377.435 kb on + strand, within ABID97_RS01905 at 377.435 kb on + strand, within ABID97_RS01905 at 377.436 kb on - strand, within ABID97_RS01905 at 377.436 kb on - strand, within ABID97_RS01905 at 377.436 kb on - strand, within ABID97_RS01905 at 377.816 kb on + strand, within ABID97_RS01905 at 377.897 kb on + strand, within ABID97_RS01905 at 377.898 kb on - strand, within ABID97_RS01905 at 378.250 kb on + strand at 378.251 kb on - strand at 378.373 kb on + strand, within ABID97_RS01910 at 378.373 kb on + strand, within ABID97_RS01910 at 378.374 kb on - strand, within ABID97_RS01910 at 378.374 kb on - strand, within ABID97_RS01910 at 378.376 kb on + strand, within ABID97_RS01910 at 378.376 kb on + strand, within ABID97_RS01910 at 378.376 kb on + strand, within ABID97_RS01910 at 378.376 kb on + strand, within ABID97_RS01910 at 378.376 kb on + strand, within ABID97_RS01910 at 378.376 kb on + strand, within ABID97_RS01910 at 378.377 kb on - strand, within ABID97_RS01910 at 378.377 kb on - strand, within ABID97_RS01910 at 378.718 kb on + strand, within ABID97_RS01910 at 378.745 kb on + strand, within ABID97_RS01910 at 378.745 kb on + strand, within ABID97_RS01910 at 378.746 kb on - strand, within ABID97_RS01910 at 378.842 kb on - strand at 378.842 kb on - strand at 378.842 kb on - strand at 378.861 kb on + strand at 378.861 kb on + strand at 378.861 kb on + strand at 378.861 kb on + strand at 378.862 kb on - strand at 378.862 kb on - strand at 378.862 kb on - strand at 378.862 kb on - strand at 378.862 kb on - strand at 379.005 kb on + strand, within ABID97_RS01915 at 379.005 kb on + strand, within ABID97_RS01915 at 379.140 kb on + strand, within ABID97_RS01915 at 379.141 kb on - strand, within ABID97_RS01915 at 379.189 kb on - strand, within ABID97_RS01915
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 376,346 - ABID97_RS01895 0.88 -0.3 376,372 + -0.8 376,373 - +0.1 376,729 - ABID97_RS01900 0.19 -1.2 376,776 + ABID97_RS01900 0.27 -0.4 377,203 - -0.2 377,203 - -0.3 377,435 + ABID97_RS01905 0.22 -0.3 377,435 + ABID97_RS01905 0.22 +0.3 377,436 - ABID97_RS01905 0.22 -1.5 377,436 - ABID97_RS01905 0.22 -0.9 377,436 - ABID97_RS01905 0.22 -0.7 377,816 + ABID97_RS01905 0.61 +0.2 377,897 + ABID97_RS01905 0.69 -0.4 377,898 - ABID97_RS01905 0.69 -0.5 378,250 + -0.1 378,251 - -0.4 378,373 + ABID97_RS01910 0.28 -1.0 378,373 + ABID97_RS01910 0.28 -1.0 378,374 - ABID97_RS01910 0.28 -0.8 378,374 - ABID97_RS01910 0.28 +0.1 378,376 + ABID97_RS01910 0.28 -0.6 378,376 + ABID97_RS01910 0.28 -0.2 378,376 + ABID97_RS01910 0.28 -0.4 378,376 + ABID97_RS01910 0.28 -0.1 378,376 + ABID97_RS01910 0.28 -0.0 378,376 + ABID97_RS01910 0.28 +1.2 378,377 - ABID97_RS01910 0.28 +0.7 378,377 - ABID97_RS01910 0.28 -0.2 378,718 + ABID97_RS01910 0.81 -0.0 378,745 + ABID97_RS01910 0.85 +2.2 378,745 + ABID97_RS01910 0.85 -0.7 378,746 - ABID97_RS01910 0.85 -0.8 378,842 - +0.1 378,842 - +0.3 378,842 - +0.3 378,861 + -1.4 378,861 + -0.7 378,861 + +0.1 378,861 + -1.3 378,862 - +0.3 378,862 - +0.1 378,862 - -1.1 378,862 - -0.5 378,862 - -0.4 379,005 + ABID97_RS01915 0.36 -0.1 379,005 + ABID97_RS01915 0.36 +0.1 379,140 + ABID97_RS01915 0.65 -0.6 379,141 - ABID97_RS01915 0.65 -0.4 379,189 - ABID97_RS01915 0.75 +1.7
Or see this region's nucleotide sequence