Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01850 and ABID97_RS01855 are separated by 82 nucleotides ABID97_RS01855 and ABID97_RS01860 are separated by 272 nucleotides
ABID97_RS01850: ABID97_RS01850 - protein translocase subunit SecD, at 362,839 to 364,722
_RS01850
ABID97_RS01855: ABID97_RS01855 - preprotein translocase subunit YajC, at 364,805 to 365,140
_RS01855
ABID97_RS01860: ABID97_RS01860 - indolepyruvate ferredoxin oxidoreductase family protein, at 365,413 to 369,021
_RS01860
Position (kb) 364
365
366 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 364.807 kb on - strand at 365.029 kb on - strand, within ABID97_RS01855 at 365.268 kb on + strand at 365.268 kb on + strand at 365.268 kb on + strand at 365.268 kb on + strand at 365.269 kb on - strand at 365.269 kb on - strand at 365.269 kb on - strand at 365.269 kb on - strand at 365.269 kb on - strand at 365.298 kb on + strand at 365.798 kb on + strand, within ABID97_RS01860 at 365.798 kb on + strand, within ABID97_RS01860 at 365.798 kb on + strand, within ABID97_RS01860 at 365.798 kb on + strand, within ABID97_RS01860 at 365.799 kb on - strand, within ABID97_RS01860 at 365.799 kb on - strand, within ABID97_RS01860 at 365.799 kb on - strand, within ABID97_RS01860 at 365.799 kb on - strand, within ABID97_RS01860 at 365.892 kb on - strand, within ABID97_RS01860 at 365.903 kb on + strand, within ABID97_RS01860 at 365.904 kb on - strand, within ABID97_RS01860 at 365.904 kb on - strand, within ABID97_RS01860 at 365.904 kb on - strand, within ABID97_RS01860 at 365.925 kb on - strand, within ABID97_RS01860 at 366.014 kb on + strand, within ABID97_RS01860 at 366.014 kb on + strand, within ABID97_RS01860 at 366.015 kb on - strand, within ABID97_RS01860
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 364,807 - +0.4 365,029 - ABID97_RS01855 0.67 -2.8 365,268 + -0.1 365,268 + +0.5 365,268 + -0.5 365,268 + -0.4 365,269 - -0.3 365,269 - +0.1 365,269 - -0.2 365,269 - +0.8 365,269 - +0.1 365,298 + +0.8 365,798 + ABID97_RS01860 0.11 -0.4 365,798 + ABID97_RS01860 0.11 -0.1 365,798 + ABID97_RS01860 0.11 -1.0 365,798 + ABID97_RS01860 0.11 -0.7 365,799 - ABID97_RS01860 0.11 -0.0 365,799 - ABID97_RS01860 0.11 -0.4 365,799 - ABID97_RS01860 0.11 +0.0 365,799 - ABID97_RS01860 0.11 -0.2 365,892 - ABID97_RS01860 0.13 +0.0 365,903 + ABID97_RS01860 0.14 +0.5 365,904 - ABID97_RS01860 0.14 -0.2 365,904 - ABID97_RS01860 0.14 +0.5 365,904 - ABID97_RS01860 0.14 -1.3 365,925 - ABID97_RS01860 0.14 -0.2 366,014 + ABID97_RS01860 0.17 -1.0 366,014 + ABID97_RS01860 0.17 +0.1 366,015 - ABID97_RS01860 0.17 +1.0
Or see this region's nucleotide sequence