Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01225 and ABID97_RS01230 are separated by 9 nucleotides ABID97_RS01230 and ABID97_RS01235 are separated by 67 nucleotides ABID97_RS01235 and ABID97_RS01240 are separated by 209 nucleotides
ABID97_RS01225: ABID97_RS01225 - VOC family protein, at 251,632 to 252,063
_RS01225
ABID97_RS01230: ABID97_RS01230 - amino acid ABC transporter substrate-binding protein, at 252,073 to 252,987
_RS01230
ABID97_RS01235: ABID97_RS01235 - LysR family transcriptional regulator, at 253,055 to 253,993
_RS01235
ABID97_RS01240: ABID97_RS01240 - biotin carboxylase N-terminal domain-containing protein, at 254,203 to 255,612
_RS01240
Position (kb) 253
254 Strain fitness (log2 ratio) -1
0
1 at 252.247 kb on + strand, within ABID97_RS01230 at 252.247 kb on + strand, within ABID97_RS01230 at 252.248 kb on - strand, within ABID97_RS01230 at 252.248 kb on - strand, within ABID97_RS01230 at 252.248 kb on - strand, within ABID97_RS01230 at 252.331 kb on + strand, within ABID97_RS01230 at 252.455 kb on - strand, within ABID97_RS01230 at 252.455 kb on - strand, within ABID97_RS01230 at 252.455 kb on - strand, within ABID97_RS01230 at 252.727 kb on + strand, within ABID97_RS01230 at 252.728 kb on - strand, within ABID97_RS01230 at 252.728 kb on - strand, within ABID97_RS01230 at 252.860 kb on - strand, within ABID97_RS01230 at 253.056 kb on + strand at 253.425 kb on + strand, within ABID97_RS01235 at 253.503 kb on + strand, within ABID97_RS01235 at 253.504 kb on - strand, within ABID97_RS01235 at 253.644 kb on - strand, within ABID97_RS01235 at 254.294 kb on - strand at 254.378 kb on - strand, within ABID97_RS01240 at 254.378 kb on - strand, within ABID97_RS01240 at 254.798 kb on - strand, within ABID97_RS01240 at 254.798 kb on - strand, within ABID97_RS01240
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 252,247 + ABID97_RS01230 0.19 +0.6 252,247 + ABID97_RS01230 0.19 -1.2 252,248 - ABID97_RS01230 0.19 +0.2 252,248 - ABID97_RS01230 0.19 +0.2 252,248 - ABID97_RS01230 0.19 +0.4 252,331 + ABID97_RS01230 0.28 +0.2 252,455 - ABID97_RS01230 0.42 +0.6 252,455 - ABID97_RS01230 0.42 +0.6 252,455 - ABID97_RS01230 0.42 -0.4 252,727 + ABID97_RS01230 0.71 +0.4 252,728 - ABID97_RS01230 0.72 -0.4 252,728 - ABID97_RS01230 0.72 -0.9 252,860 - ABID97_RS01230 0.86 +0.2 253,056 + -0.3 253,425 + ABID97_RS01235 0.39 +0.2 253,503 + ABID97_RS01235 0.48 -0.1 253,504 - ABID97_RS01235 0.48 -0.8 253,644 - ABID97_RS01235 0.63 -0.0 254,294 - -0.0 254,378 - ABID97_RS01240 0.12 +1.5 254,378 - ABID97_RS01240 0.12 +0.5 254,798 - ABID97_RS01240 0.42 +0.7 254,798 - ABID97_RS01240 0.42 +0.7
Or see this region's nucleotide sequence