Strain Fitness in Escherichia coli BW25113 around b1732

Experiment: undecene 2.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydjO and cedA are separated by 288 nucleotidescedA and katE are separated by 203 nucleotideskatE and chbG are separated by 257 nucleotides b1730: ydjO - predicted protein (RefSeq), at 1,810,353 to 1,811,156 ydjO b1731: cedA - cell division modulator (RefSeq), at 1,811,445 to 1,811,687 cedA b1732: katE - hydroperoxidase HPII(III) (catalase) (NCBI), at 1,811,891 to 1,814,152 katE b1733: chbG - hypothetical protein (NCBI), at 1,814,410 to 1,815,159 chbG Position (kb) 1811 1812 1813 1814 1815Strain fitness (log2 ratio) -2 -1 0 1at 1811.304 kb on - strandat 1811.393 kb on - strandat 1811.444 kb on - strandat 1811.505 kb on - strand, within cedAat 1811.536 kb on - strand, within cedAat 1811.536 kb on - strand, within cedAat 1811.541 kb on + strand, within cedAat 1811.814 kb on + strandat 1811.821 kb on + strandat 1812.027 kb on + strandat 1812.052 kb on + strandat 1812.060 kb on - strandat 1812.106 kb on - strandat 1812.243 kb on + strand, within katEat 1812.269 kb on + strand, within katEat 1812.423 kb on - strand, within katEat 1812.649 kb on + strand, within katEat 1812.649 kb on + strand, within katEat 1812.667 kb on + strand, within katEat 1812.700 kb on - strand, within katEat 1813.059 kb on + strand, within katEat 1813.059 kb on + strand, within katEat 1813.137 kb on - strand, within katEat 1813.139 kb on - strand, within katEat 1813.139 kb on - strand, within katEat 1813.423 kb on - strand, within katEat 1813.423 kb on - strand, within katEat 1813.608 kb on - strand, within katEat 1813.685 kb on - strand, within katEat 1813.690 kb on - strand, within katEat 1813.735 kb on + strand, within katEat 1813.963 kb on + strandat 1813.963 kb on + strandat 1813.971 kb on - strandat 1814.415 kb on - strandat 1814.415 kb on - strandat 1814.484 kb on + strandat 1814.510 kb on - strand, within chbGat 1814.658 kb on + strand, within chbGat 1814.658 kb on + strand, within chbGat 1814.702 kb on - strand, within chbGat 1814.945 kb on + strand, within chbGat 1814.945 kb on + strand, within chbGat 1815.106 kb on - strandat 1815.143 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction undecene 2.5 vol%
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1,811,304 - -0.4
1,811,393 - -0.5
1,811,444 - +0.4
1,811,505 - cedA b1731 0.25 +0.4
1,811,536 - cedA b1731 0.37 +0.8
1,811,536 - cedA b1731 0.37 +0.6
1,811,541 + cedA b1731 0.40 +0.8
1,811,814 + -0.6
1,811,821 + +0.2
1,812,027 + +1.1
1,812,052 + -0.3
1,812,060 - +0.6
1,812,106 - -0.0
1,812,243 + katE b1732 0.16 +0.2
1,812,269 + katE b1732 0.17 -0.6
1,812,423 - katE b1732 0.24 +0.2
1,812,649 + katE b1732 0.34 -1.0
1,812,649 + katE b1732 0.34 -0.8
1,812,667 + katE b1732 0.34 +1.6
1,812,700 - katE b1732 0.36 -0.1
1,813,059 + katE b1732 0.52 -1.3
1,813,059 + katE b1732 0.52 -0.9
1,813,137 - katE b1732 0.55 +1.2
1,813,139 - katE b1732 0.55 -2.0
1,813,139 - katE b1732 0.55 +1.7
1,813,423 - katE b1732 0.68 +0.1
1,813,423 - katE b1732 0.68 -0.3
1,813,608 - katE b1732 0.76 +0.5
1,813,685 - katE b1732 0.79 -0.0
1,813,690 - katE b1732 0.80 -2.0
1,813,735 + katE b1732 0.82 -0.0
1,813,963 + -0.5
1,813,963 + +0.0
1,813,971 - -0.5
1,814,415 - +0.8
1,814,415 - -0.4
1,814,484 + +0.5
1,814,510 - chbG b1733 0.13 +0.3
1,814,658 + chbG b1733 0.33 +1.6
1,814,658 + chbG b1733 0.33 -0.2
1,814,702 - chbG b1733 0.39 +0.4
1,814,945 + chbG b1733 0.71 -0.5
1,814,945 + chbG b1733 0.71 -0.7
1,815,106 - +0.5
1,815,143 + +0.6

Or see this region's nucleotide sequence