Strain Fitness in Escherichia coli BW25113 around b2436

Experiment: undecene 2.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntamiA and hemF are separated by 3 nucleotideshemF and yfeG are separated by 5 nucleotides b2435: amiA - N-acetylmuramoyl-l-alanine amidase I (NCBI), at 2,550,374 to 2,551,243 amiA b2436: hemF - coproporphyrinogen III oxidase (NCBI), at 2,551,247 to 2,552,146 hemF b2437: yfeG - predicted DNA-binding transcriptional regulator (NCBI), at 2,552,152 to 2,553,204 yfeG Position (kb) 2551 2552 2553Strain fitness (log2 ratio) -3 -2 -1 0 1at 2550.357 kb on + strandat 2550.357 kb on + strandat 2550.381 kb on + strandat 2550.597 kb on - strand, within amiAat 2550.631 kb on - strand, within amiAat 2550.747 kb on + strand, within amiAat 2550.779 kb on + strand, within amiAat 2550.779 kb on + strand, within amiAat 2551.032 kb on + strand, within amiAat 2551.066 kb on - strand, within amiAat 2551.197 kb on + strandat 2551.266 kb on + strandat 2551.295 kb on - strandat 2551.295 kb on - strandat 2551.355 kb on - strand, within hemFat 2551.444 kb on + strand, within hemFat 2551.444 kb on + strand, within hemFat 2551.531 kb on - strand, within hemFat 2551.643 kb on - strand, within hemFat 2551.645 kb on + strand, within hemFat 2551.678 kb on + strand, within hemFat 2551.678 kb on + strand, within hemFat 2551.837 kb on + strand, within hemFat 2551.837 kb on + strand, within hemFat 2552.065 kb on - strandat 2552.065 kb on - strandat 2552.087 kb on + strandat 2552.087 kb on + strandat 2552.141 kb on + strandat 2552.262 kb on - strand, within yfeGat 2552.262 kb on - strand, within yfeGat 2552.460 kb on + strand, within yfeGat 2552.460 kb on + strand, within yfeGat 2552.659 kb on - strand, within yfeGat 2552.659 kb on - strand, within yfeGat 2552.719 kb on - strand, within yfeGat 2552.790 kb on - strand, within yfeGat 2552.790 kb on - strand, within yfeGat 2552.812 kb on - strand, within yfeGat 2552.812 kb on - strand, within yfeGat 2552.881 kb on + strand, within yfeGat 2552.881 kb on + strand, within yfeGat 2552.917 kb on + strand, within yfeGat 2552.917 kb on + strand, within yfeGat 2552.932 kb on + strand, within yfeGat 2552.992 kb on - strand, within yfeG

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Per-strain Table

Position Strand Gene LocusTag Fraction undecene 2.5 vol%
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2,550,357 + +0.5
2,550,357 + +0.3
2,550,381 + -0.0
2,550,597 - amiA b2435 0.26 -0.0
2,550,631 - amiA b2435 0.30 -0.1
2,550,747 + amiA b2435 0.43 -0.0
2,550,779 + amiA b2435 0.47 -0.7
2,550,779 + amiA b2435 0.47 +1.2
2,551,032 + amiA b2435 0.76 +0.5
2,551,066 - amiA b2435 0.80 +0.8
2,551,197 + +0.6
2,551,266 + -2.0
2,551,295 - -0.8
2,551,295 - -1.2
2,551,355 - hemF b2436 0.12 -0.7
2,551,444 + hemF b2436 0.22 -1.0
2,551,444 + hemF b2436 0.22 -0.6
2,551,531 - hemF b2436 0.32 -1.7
2,551,643 - hemF b2436 0.44 -0.2
2,551,645 + hemF b2436 0.44 -2.5
2,551,678 + hemF b2436 0.48 -3.0
2,551,678 + hemF b2436 0.48 -2.3
2,551,837 + hemF b2436 0.66 -1.2
2,551,837 + hemF b2436 0.66 -2.6
2,552,065 - -2.5
2,552,065 - -0.6
2,552,087 + -2.9
2,552,087 + -2.3
2,552,141 + -0.1
2,552,262 - yfeG b2437 0.10 +0.3
2,552,262 - yfeG b2437 0.10 +0.6
2,552,460 + yfeG b2437 0.29 +0.4
2,552,460 + yfeG b2437 0.29 -0.5
2,552,659 - yfeG b2437 0.48 -0.4
2,552,659 - yfeG b2437 0.48 +0.8
2,552,719 - yfeG b2437 0.54 -0.1
2,552,790 - yfeG b2437 0.61 +0.3
2,552,790 - yfeG b2437 0.61 -0.0
2,552,812 - yfeG b2437 0.63 -0.5
2,552,812 - yfeG b2437 0.63 -0.8
2,552,881 + yfeG b2437 0.69 -2.3
2,552,881 + yfeG b2437 0.69 +1.6
2,552,917 + yfeG b2437 0.73 -0.0
2,552,917 + yfeG b2437 0.73 -0.1
2,552,932 + yfeG b2437 0.74 +0.7
2,552,992 - yfeG b2437 0.80 -0.2

Or see this region's nucleotide sequence