Strain Fitness in Escherichia coli BW25113 around b1019

Experiment: undecene 2.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntycdO and ycdB are separated by 5 nucleotidesycdB and phoH are separated by 344 nucleotides b1018: ycdO - hypothetical protein (NCBI), at 1,081,466 to 1,082,593 ycdO b1019: ycdB - hypothetical protein (NCBI), at 1,082,599 to 1,083,870 ycdB b1020: phoH - conserved protein with nucleoside triphosphate hydrolase domain (NCBI), at 1,084,215 to 1,085,279 phoH Position (kb) 1082 1083 1084Strain fitness (log2 ratio) -1 0 1at 1081.663 kb on + strand, within ycdOat 1081.663 kb on + strand, within ycdOat 1081.663 kb on - strand, within ycdOat 1081.663 kb on - strand, within ycdOat 1081.678 kb on - strand, within ycdOat 1081.852 kb on + strand, within ycdOat 1081.852 kb on + strand, within ycdOat 1081.908 kb on + strand, within ycdOat 1081.944 kb on + strand, within ycdOat 1081.979 kb on + strand, within ycdOat 1082.039 kb on + strand, within ycdOat 1082.039 kb on + strand, within ycdOat 1082.156 kb on - strand, within ycdOat 1082.179 kb on + strand, within ycdOat 1082.192 kb on - strand, within ycdOat 1082.382 kb on + strand, within ycdOat 1082.392 kb on + strand, within ycdOat 1082.515 kb on + strandat 1082.515 kb on + strandat 1082.594 kb on + strandat 1082.783 kb on - strand, within ycdBat 1082.787 kb on + strand, within ycdBat 1082.912 kb on + strand, within ycdBat 1083.109 kb on + strand, within ycdBat 1083.141 kb on - strand, within ycdBat 1083.141 kb on - strand, within ycdBat 1083.197 kb on + strand, within ycdBat 1083.212 kb on + strand, within ycdBat 1083.620 kb on + strand, within ycdBat 1083.620 kb on + strand, within ycdBat 1083.621 kb on + strand, within ycdBat 1083.650 kb on + strand, within ycdBat 1083.720 kb on - strand, within ycdBat 1083.787 kb on - strandat 1083.904 kb on + strandat 1084.000 kb on - strandat 1084.124 kb on - strandat 1084.407 kb on - strand, within phoHat 1084.446 kb on + strand, within phoHat 1084.494 kb on + strand, within phoHat 1084.561 kb on + strand, within phoHat 1084.620 kb on - strand, within phoHat 1084.765 kb on + strand, within phoHat 1084.860 kb on - strand, within phoH

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Per-strain Table

Position Strand Gene LocusTag Fraction undecene 2.5 vol%
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1,081,663 + ycdO b1018 0.17 +1.3
1,081,663 + ycdO b1018 0.17 -0.4
1,081,663 - ycdO b1018 0.17 +0.6
1,081,663 - ycdO b1018 0.17 +0.1
1,081,678 - ycdO b1018 0.19 +0.8
1,081,852 + ycdO b1018 0.34 +1.7
1,081,852 + ycdO b1018 0.34 +0.5
1,081,908 + ycdO b1018 0.39 +0.2
1,081,944 + ycdO b1018 0.42 +0.5
1,081,979 + ycdO b1018 0.45 +0.4
1,082,039 + ycdO b1018 0.51 -0.3
1,082,039 + ycdO b1018 0.51 -0.5
1,082,156 - ycdO b1018 0.61 +0.1
1,082,179 + ycdO b1018 0.63 +0.6
1,082,192 - ycdO b1018 0.64 +0.8
1,082,382 + ycdO b1018 0.81 -0.2
1,082,392 + ycdO b1018 0.82 +0.0
1,082,515 + +0.2
1,082,515 + +0.5
1,082,594 + +0.3
1,082,783 - ycdB b1019 0.14 +0.8
1,082,787 + ycdB b1019 0.15 +0.1
1,082,912 + ycdB b1019 0.25 -0.1
1,083,109 + ycdB b1019 0.40 +0.3
1,083,141 - ycdB b1019 0.43 +1.7
1,083,141 - ycdB b1019 0.43 +0.2
1,083,197 + ycdB b1019 0.47 -0.8
1,083,212 + ycdB b1019 0.48 +0.6
1,083,620 + ycdB b1019 0.80 +0.6
1,083,620 + ycdB b1019 0.80 +0.2
1,083,621 + ycdB b1019 0.80 +0.0
1,083,650 + ycdB b1019 0.83 +0.8
1,083,720 - ycdB b1019 0.88 +0.4
1,083,787 - +1.1
1,083,904 + -1.2
1,084,000 - -0.4
1,084,124 - +0.3
1,084,407 - phoH b1020 0.18 -0.2
1,084,446 + phoH b1020 0.22 +0.6
1,084,494 + phoH b1020 0.26 +0.6
1,084,561 + phoH b1020 0.32 -0.0
1,084,620 - phoH b1020 0.38 +0.3
1,084,765 + phoH b1020 0.52 -0.2
1,084,860 - phoH b1020 0.61 +0.6

Or see this region's nucleotide sequence