Strain Fitness in Escherichia coli BW25113 around b0681

Experiment: undecene 2.5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntglnS and ybfM are separated by 576 nucleotidesybfM and ybfN are separated by 49 nucleotidesybfN and fur are separated by 83 nucleotidesfur and uof overlap by 8 nucleotides b0680: glnS - glutaminyl-tRNA synthetase (NCBI), at 705,316 to 706,980 glnS b0681: ybfM - predicted outer membrane porin (NCBI), at 707,557 to 708,963 ybfM b0682: ybfN - predicted lipoprotein (NCBI), at 709,013 to 709,339 ybfN b0683: fur - ferric uptake regulator (NCBI), at 709,423 to 709,869 fur b4637: uof - ryhB-regulated fur leader peptide (RefSeq), at 709,862 to 709,948 uof Position (kb) 707 708 709Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 706.950 kb on + strandat 706.950 kb on + strandat 707.325 kb on - strandat 707.325 kb on - strandat 707.356 kb on - strandat 707.356 kb on - strandat 707.456 kb on + strandat 707.546 kb on - strandat 707.566 kb on - strandat 707.566 kb on - strandat 707.664 kb on - strandat 707.834 kb on + strand, within ybfMat 707.917 kb on + strand, within ybfMat 707.945 kb on + strand, within ybfMat 707.983 kb on + strand, within ybfMat 708.126 kb on + strand, within ybfMat 708.126 kb on + strand, within ybfMat 708.224 kb on + strand, within ybfMat 708.279 kb on - strand, within ybfMat 708.288 kb on + strand, within ybfMat 708.288 kb on + strand, within ybfMat 708.288 kb on + strand, within ybfMat 708.288 kb on + strand, within ybfMat 708.291 kb on + strand, within ybfMat 708.389 kb on - strand, within ybfMat 708.389 kb on - strand, within ybfMat 708.760 kb on - strand, within ybfMat 708.764 kb on + strand, within ybfMat 708.766 kb on + strand, within ybfMat 708.766 kb on + strand, within ybfMat 708.785 kb on + strand, within ybfMat 708.785 kb on + strand, within ybfMat 708.800 kb on + strand, within ybfMat 708.803 kb on + strand, within ybfMat 708.894 kb on - strandat 708.943 kb on + strandat 709.039 kb on + strandat 709.113 kb on - strand, within ybfNat 709.113 kb on - strand, within ybfNat 709.126 kb on - strand, within ybfNat 709.238 kb on + strand, within ybfNat 709.247 kb on - strand, within ybfNat 709.247 kb on - strand, within ybfNat 709.257 kb on - strand, within ybfNat 709.428 kb on - strandat 709.428 kb on - strandat 709.595 kb on + strand, within furat 709.678 kb on - strand, within furat 709.699 kb on + strand, within furat 709.861 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction undecene 2.5 vol%
remove
706,950 + +1.0
706,950 + +1.0
707,325 - +0.7
707,325 - -0.0
707,356 - +0.9
707,356 - -0.4
707,456 + -0.9
707,546 - +0.4
707,566 - -0.7
707,566 - +0.4
707,664 - -2.8
707,834 + ybfM b0681 0.20 -0.6
707,917 + ybfM b0681 0.26 +0.4
707,945 + ybfM b0681 0.28 -0.6
707,983 + ybfM b0681 0.30 -0.0
708,126 + ybfM b0681 0.40 -0.6
708,126 + ybfM b0681 0.40 -0.3
708,224 + ybfM b0681 0.47 +0.9
708,279 - ybfM b0681 0.51 +0.1
708,288 + ybfM b0681 0.52 -0.0
708,288 + ybfM b0681 0.52 -0.8
708,288 + ybfM b0681 0.52 +0.2
708,288 + ybfM b0681 0.52 -0.2
708,291 + ybfM b0681 0.52 -0.7
708,389 - ybfM b0681 0.59 -0.2
708,389 - ybfM b0681 0.59 -0.3
708,760 - ybfM b0681 0.86 -0.4
708,764 + ybfM b0681 0.86 -0.2
708,766 + ybfM b0681 0.86 -0.6
708,766 + ybfM b0681 0.86 +0.8
708,785 + ybfM b0681 0.87 -3.5
708,785 + ybfM b0681 0.87 -1.0
708,800 + ybfM b0681 0.88 -1.0
708,803 + ybfM b0681 0.89 +1.0
708,894 - +0.4
708,943 + +1.0
709,039 + +0.3
709,113 - ybfN b0682 0.31 +0.7
709,113 - ybfN b0682 0.31 +1.1
709,126 - ybfN b0682 0.35 +1.2
709,238 + ybfN b0682 0.69 +0.4
709,247 - ybfN b0682 0.72 -0.7
709,247 - ybfN b0682 0.72 +0.0
709,257 - ybfN b0682 0.75 +0.3
709,428 - +0.0
709,428 - -0.0
709,595 + fur b0683 0.38 -2.0
709,678 - fur b0683 0.57 -2.1
709,699 + fur b0683 0.62 -3.8
709,861 - -0.6

Or see this region's nucleotide sequence