Strain Fitness in Escherichia coli BW25113 around b0680

Experiment: undecene 2.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnagE and glnS are separated by 202 nucleotidesglnS and ybfM are separated by 576 nucleotides b0679: nagE - fused N-acetyl glucosamine specific PTS enzyme: IIC, IIB , and IIA components (NCBI), at 703,167 to 705,113 nagE b0680: glnS - glutaminyl-tRNA synthetase (NCBI), at 705,316 to 706,980 glnS b0681: ybfM - predicted outer membrane porin (NCBI), at 707,557 to 708,963 ybfM Position (kb) 705 706 707Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 704.356 kb on + strand, within nagEat 704.464 kb on - strand, within nagEat 704.500 kb on - strand, within nagEat 704.513 kb on - strand, within nagEat 704.513 kb on - strand, within nagEat 704.532 kb on + strand, within nagEat 704.648 kb on - strand, within nagEat 704.648 kb on - strand, within nagEat 704.648 kb on - strand, within nagEat 704.686 kb on - strand, within nagEat 704.726 kb on + strand, within nagEat 704.787 kb on - strand, within nagEat 704.800 kb on - strand, within nagEat 704.876 kb on + strand, within nagEat 704.876 kb on + strand, within nagEat 704.922 kb on + strandat 704.942 kb on - strandat 705.090 kb on - strandat 705.090 kb on - strandat 705.257 kb on - strandat 705.281 kb on + strandat 705.302 kb on + strandat 706.950 kb on + strandat 706.950 kb on + strandat 707.325 kb on - strandat 707.325 kb on - strandat 707.356 kb on - strandat 707.356 kb on - strandat 707.456 kb on + strandat 707.546 kb on - strandat 707.566 kb on - strandat 707.566 kb on - strandat 707.664 kb on - strandat 707.834 kb on + strand, within ybfMat 707.917 kb on + strand, within ybfMat 707.945 kb on + strand, within ybfM

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Per-strain Table

Position Strand Gene LocusTag Fraction undecene 2.5 vol%
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704,356 + nagE b0679 0.61 -0.4
704,464 - nagE b0679 0.67 +0.8
704,500 - nagE b0679 0.68 -0.1
704,513 - nagE b0679 0.69 +0.6
704,513 - nagE b0679 0.69 +0.4
704,532 + nagE b0679 0.70 +0.1
704,648 - nagE b0679 0.76 +0.4
704,648 - nagE b0679 0.76 +0.6
704,648 - nagE b0679 0.76 -0.1
704,686 - nagE b0679 0.78 +0.1
704,726 + nagE b0679 0.80 -1.1
704,787 - nagE b0679 0.83 -1.8
704,800 - nagE b0679 0.84 +0.0
704,876 + nagE b0679 0.88 +0.2
704,876 + nagE b0679 0.88 +0.8
704,922 + +0.2
704,942 - +0.6
705,090 - -2.0
705,090 - -1.1
705,257 - -0.9
705,281 + +0.1
705,302 + +4.0
706,950 + +1.0
706,950 + +1.0
707,325 - +0.7
707,325 - -0.0
707,356 - +0.9
707,356 - -0.4
707,456 + -0.9
707,546 - +0.4
707,566 - -0.7
707,566 - +0.4
707,664 - -2.8
707,834 + ybfM b0681 0.20 -0.6
707,917 + ybfM b0681 0.26 +0.4
707,945 + ybfM b0681 0.28 -0.6

Or see this region's nucleotide sequence