Strain Fitness in Escherichia coli BW25113 around b4396

Experiment: undecene 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjjX and ytjC are separated by 51 nucleotidesytjC and rob overlap by 4 nucleotidesrob and creA are separated by 210 nucleotidescreA and creB are separated by 12 nucleotides b4394: yjjX - orf, hypothetical protein (VIMSS), at 4,631,256 to 4,631,768 yjjX b4395: ytjC - phosphoglycerate mutase (NCBI), at 4,631,820 to 4,632,467 ytjC b4396: rob - DNA-binding transcriptional activator (NCBI), at 4,632,464 to 4,633,333 rob b4397: creA - hypothetical protein (NCBI), at 4,633,544 to 4,634,017 creA b4398: creB - DNA-binding response regulator in two-component regulatory system with CreC (NCBI), at 4,634,030 to 4,634,719 creB Position (kb) 4632 4633 4634Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4631.520 kb on + strand, within yjjXat 4631.537 kb on - strand, within yjjXat 4631.871 kb on - strandat 4631.878 kb on + strandat 4631.965 kb on + strand, within ytjCat 4631.965 kb on + strand, within ytjCat 4631.991 kb on - strand, within ytjCat 4632.026 kb on - strand, within ytjCat 4632.026 kb on - strand, within ytjCat 4632.026 kb on - strand, within ytjCat 4632.255 kb on + strand, within ytjCat 4632.357 kb on - strand, within ytjCat 4632.357 kb on - strand, within ytjCat 4632.395 kb on + strand, within ytjCat 4632.439 kb on + strandat 4632.439 kb on + strandat 4632.444 kb on + strandat 4632.444 kb on + strandat 4632.447 kb on - strandat 4632.447 kb on - strandat 4632.520 kb on + strandat 4632.520 kb on + strandat 4632.545 kb on - strandat 4632.550 kb on - strandat 4632.567 kb on - strand, within robat 4632.569 kb on - strand, within robat 4632.579 kb on - strand, within robat 4632.583 kb on + strand, within robat 4632.609 kb on - strand, within robat 4632.650 kb on + strand, within robat 4632.664 kb on - strand, within robat 4632.664 kb on - strand, within robat 4632.700 kb on + strand, within robat 4632.708 kb on - strand, within robat 4632.708 kb on - strand, within robat 4632.805 kb on - strand, within robat 4632.883 kb on + strand, within robat 4632.883 kb on + strand, within robat 4632.907 kb on + strand, within robat 4632.910 kb on - strand, within robat 4632.915 kb on - strand, within robat 4632.915 kb on - strand, within robat 4632.931 kb on + strand, within robat 4632.932 kb on + strand, within robat 4633.037 kb on + strand, within robat 4633.037 kb on + strand, within robat 4633.038 kb on - strand, within robat 4633.089 kb on + strand, within robat 4633.089 kb on + strand, within robat 4633.102 kb on - strand, within robat 4633.102 kb on - strand, within robat 4633.193 kb on + strand, within robat 4633.193 kb on + strand, within robat 4633.193 kb on + strand, within robat 4633.227 kb on - strand, within robat 4633.227 kb on - strand, within robat 4633.244 kb on - strand, within robat 4633.274 kb on - strandat 4633.306 kb on - strandat 4633.317 kb on + strandat 4633.364 kb on - strandat 4633.367 kb on + strandat 4633.441 kb on - strandat 4633.445 kb on - strandat 4633.540 kb on - strandat 4633.602 kb on + strand, within creAat 4633.610 kb on - strand, within creAat 4633.621 kb on + strand, within creAat 4633.803 kb on + strand, within creAat 4633.871 kb on + strand, within creAat 4633.885 kb on + strand, within creAat 4633.888 kb on + strand, within creAat 4633.897 kb on - strand, within creAat 4633.942 kb on - strand, within creAat 4633.942 kb on - strand, within creAat 4634.001 kb on + strandat 4634.003 kb on + strandat 4634.232 kb on + strand, within creBat 4634.256 kb on + strand, within creBat 4634.274 kb on - strand, within creBat 4634.276 kb on + strand, within creBat 4634.318 kb on + strand, within creB

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Per-strain Table

Position Strand Gene LocusTag Fraction undecene 5 vol%
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4,631,520 + yjjX b4394 0.51 -0.1
4,631,537 - yjjX b4394 0.55 +0.2
4,631,871 - -0.7
4,631,878 + -0.2
4,631,965 + ytjC b4395 0.22 -1.9
4,631,965 + ytjC b4395 0.22 +0.4
4,631,991 - ytjC b4395 0.26 -0.2
4,632,026 - ytjC b4395 0.32 +0.7
4,632,026 - ytjC b4395 0.32 +0.7
4,632,026 - ytjC b4395 0.32 +0.5
4,632,255 + ytjC b4395 0.67 -0.3
4,632,357 - ytjC b4395 0.83 +0.0
4,632,357 - ytjC b4395 0.83 +0.9
4,632,395 + ytjC b4395 0.89 +0.5
4,632,439 + -0.8
4,632,439 + -0.0
4,632,444 + +1.0
4,632,444 + -1.3
4,632,447 - +0.8
4,632,447 - -0.3
4,632,520 + -1.1
4,632,520 + -1.5
4,632,545 - -0.9
4,632,550 - -0.5
4,632,567 - rob b4396 0.12 -1.0
4,632,569 - rob b4396 0.12 -1.4
4,632,579 - rob b4396 0.13 -1.0
4,632,583 + rob b4396 0.14 -1.2
4,632,609 - rob b4396 0.17 -1.9
4,632,650 + rob b4396 0.21 -1.2
4,632,664 - rob b4396 0.23 -0.0
4,632,664 - rob b4396 0.23 -1.0
4,632,700 + rob b4396 0.27 -1.5
4,632,708 - rob b4396 0.28 -1.0
4,632,708 - rob b4396 0.28 -2.6
4,632,805 - rob b4396 0.39 -0.6
4,632,883 + rob b4396 0.48 -1.1
4,632,883 + rob b4396 0.48 -0.3
4,632,907 + rob b4396 0.51 -3.9
4,632,910 - rob b4396 0.51 -0.4
4,632,915 - rob b4396 0.52 -3.3
4,632,915 - rob b4396 0.52 -0.9
4,632,931 + rob b4396 0.54 +0.3
4,632,932 + rob b4396 0.54 -0.8
4,633,037 + rob b4396 0.66 -2.5
4,633,037 + rob b4396 0.66 -1.7
4,633,038 - rob b4396 0.66 -2.5
4,633,089 + rob b4396 0.72 -1.0
4,633,089 + rob b4396 0.72 -1.8
4,633,102 - rob b4396 0.73 -2.6
4,633,102 - rob b4396 0.73 -2.1
4,633,193 + rob b4396 0.84 -2.2
4,633,193 + rob b4396 0.84 -2.7
4,633,193 + rob b4396 0.84 -2.4
4,633,227 - rob b4396 0.88 -0.7
4,633,227 - rob b4396 0.88 -1.4
4,633,244 - rob b4396 0.90 -1.3
4,633,274 - -1.3
4,633,306 - -1.4
4,633,317 + -2.4
4,633,364 - +1.8
4,633,367 + -1.8
4,633,441 - +2.2
4,633,445 - +2.9
4,633,540 - +2.1
4,633,602 + creA b4397 0.12 -0.8
4,633,610 - creA b4397 0.14 +2.7
4,633,621 + creA b4397 0.16 -0.4
4,633,803 + creA b4397 0.55 -0.5
4,633,871 + creA b4397 0.69 -0.5
4,633,885 + creA b4397 0.72 -0.4
4,633,888 + creA b4397 0.73 +0.0
4,633,897 - creA b4397 0.74 +0.2
4,633,942 - creA b4397 0.84 -0.6
4,633,942 - creA b4397 0.84 +1.0
4,634,001 + -0.7
4,634,003 + -0.7
4,634,232 + creB b4398 0.29 -0.8
4,634,256 + creB b4398 0.33 +0.9
4,634,274 - creB b4398 0.35 +1.1
4,634,276 + creB b4398 0.36 -0.3
4,634,318 + creB b4398 0.42 +0.2

Or see this region's nucleotide sequence