Strain Fitness in Escherichia coli BW25113 around b3728
Experiment: undecene 5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | undecene 5 vol% |
---|---|---|---|---|---|
remove | |||||
3,907,561 | - | pstC | b3727 | 0.10 | -1.8 |
3,907,580 | - | pstC | b3727 | 0.12 | -0.0 |
3,907,619 | - | pstC | b3727 | 0.16 | -2.1 |
3,907,619 | - | pstC | b3727 | 0.16 | -0.8 |
3,907,634 | + | pstC | b3727 | 0.18 | -2.5 |
3,907,634 | + | pstC | b3727 | 0.18 | -2.0 |
3,907,634 | + | pstC | b3727 | 0.18 | -1.8 |
3,907,645 | - | pstC | b3727 | 0.19 | -0.9 |
3,907,647 | - | pstC | b3727 | 0.19 | -1.6 |
3,907,675 | - | pstC | b3727 | 0.22 | -1.1 |
3,907,675 | - | pstC | b3727 | 0.22 | -0.8 |
3,907,727 | - | pstC | b3727 | 0.28 | -1.5 |
3,907,769 | - | pstC | b3727 | 0.32 | -3.2 |
3,907,818 | - | pstC | b3727 | 0.37 | -1.3 |
3,908,058 | - | pstC | b3727 | 0.62 | -0.5 |
3,908,304 | - | pstC | b3727 | 0.88 | -2.8 |
3,908,435 | + | -2.4 | |||
3,908,469 | - | -0.3 | |||
3,908,484 | - | +0.2 | |||
3,908,484 | - | +0.3 | |||
3,908,509 | - | +0.2 | |||
3,908,524 | + | -2.4 | |||
3,908,540 | - | -0.2 | |||
3,908,567 | + | -3.3 | |||
3,908,570 | + | -1.3 | |||
3,908,570 | + | -2.2 | |||
3,908,575 | - | +1.0 | |||
3,908,580 | + | -1.7 | |||
3,908,580 | + | -1.5 | |||
3,908,588 | + | -1.0 | |||
3,908,588 | + | -0.2 | |||
3,908,648 | - | pstS | b3728 | 0.13 | -2.2 |
3,908,665 | - | pstS | b3728 | 0.15 | -1.8 |
3,908,708 | + | pstS | b3728 | 0.19 | -1.5 |
3,908,724 | - | pstS | b3728 | 0.21 | -0.7 |
3,908,749 | - | pstS | b3728 | 0.23 | -2.0 |
3,908,749 | - | pstS | b3728 | 0.23 | -1.3 |
3,908,891 | - | pstS | b3728 | 0.37 | -2.6 |
3,908,919 | - | pstS | b3728 | 0.39 | -3.4 |
3,908,973 | + | pstS | b3728 | 0.45 | -2.0 |
3,908,997 | - | pstS | b3728 | 0.47 | -3.9 |
3,909,029 | + | pstS | b3728 | 0.50 | -2.2 |
3,909,095 | - | pstS | b3728 | 0.56 | -2.5 |
3,909,155 | + | pstS | b3728 | 0.62 | -1.8 |
3,909,161 | + | pstS | b3728 | 0.63 | -2.1 |
3,909,231 | - | pstS | b3728 | 0.69 | -2.7 |
3,909,231 | - | pstS | b3728 | 0.69 | -3.9 |
3,909,439 | - | pstS | b3728 | 0.89 | -2.1 |
3,909,445 | - | -2.5 | |||
3,909,480 | + | -1.7 | |||
3,909,480 | + | -2.2 | |||
3,909,504 | - | -1.8 | |||
3,909,537 | - | -0.2 | |||
3,909,553 | - | -0.7 | |||
3,909,562 | - | -0.9 | |||
3,909,566 | + | -2.2 | |||
3,909,566 | + | -1.3 | |||
3,909,608 | - | -1.3 | |||
3,909,621 | + | -0.3 | |||
3,909,763 | - | +1.5 | |||
3,909,791 | + | +0.2 | |||
3,909,847 | - | +0.1 | |||
3,909,847 | - | -0.4 | |||
3,909,857 | - | -0.7 |
Or see this region's nucleotide sequence