Strain Fitness in Escherichia coli BW25113 around b3498
Experiment: undecene 5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | undecene 5 vol% |
---|---|---|---|---|---|
remove | |||||
3,640,225 | + | -0.1 | |||
3,640,235 | + | -0.0 | |||
3,640,235 | + | +0.1 | |||
3,640,237 | + | -0.8 | |||
3,640,241 | + | -0.4 | |||
3,640,241 | + | +0.6 | |||
3,640,253 | - | -0.2 | |||
3,640,271 | - | -0.7 | |||
3,640,290 | - | -2.1 | |||
3,640,292 | + | +0.3 | |||
3,640,295 | - | +0.0 | |||
3,640,298 | - | +0.8 | |||
3,640,303 | + | -0.4 | |||
3,640,326 | - | +1.8 | |||
3,640,326 | - | +0.9 | |||
3,640,347 | + | +1.1 | |||
3,640,368 | + | -0.6 | |||
3,640,376 | - | +0.5 | |||
3,640,378 | + | -0.3 | |||
3,640,416 | + | +0.5 | |||
3,640,416 | + | -0.9 | |||
3,640,416 | + | +1.0 | |||
3,640,416 | + | -0.3 | |||
3,640,436 | - | +0.9 | |||
3,640,488 | + | yhiQ | b3497 | 0.11 | +0.4 |
3,640,488 | + | yhiQ | b3497 | 0.11 | +1.2 |
3,640,510 | - | yhiQ | b3497 | 0.14 | +0.0 |
3,640,627 | - | yhiQ | b3497 | 0.30 | +0.1 |
3,640,627 | - | yhiQ | b3497 | 0.30 | -0.1 |
3,640,641 | - | yhiQ | b3497 | 0.32 | +1.1 |
3,640,664 | - | yhiQ | b3497 | 0.35 | -0.2 |
3,640,664 | - | yhiQ | b3497 | 0.35 | +0.0 |
3,640,669 | + | yhiQ | b3497 | 0.35 | +0.1 |
3,640,677 | - | yhiQ | b3497 | 0.36 | +1.2 |
3,640,677 | - | yhiQ | b3497 | 0.36 | +0.4 |
3,640,677 | - | yhiQ | b3497 | 0.36 | +0.2 |
3,640,677 | - | yhiQ | b3497 | 0.36 | -0.1 |
3,640,677 | - | yhiQ | b3497 | 0.36 | +1.3 |
3,640,687 | + | yhiQ | b3497 | 0.38 | +0.4 |
3,640,687 | + | yhiQ | b3497 | 0.38 | +1.6 |
3,640,729 | - | yhiQ | b3497 | 0.43 | +0.6 |
3,640,731 | - | yhiQ | b3497 | 0.44 | +0.6 |
3,640,781 | - | yhiQ | b3497 | 0.50 | +0.8 |
3,640,802 | - | yhiQ | b3497 | 0.53 | +1.1 |
3,640,830 | + | yhiQ | b3497 | 0.57 | +0.8 |
3,640,835 | + | yhiQ | b3497 | 0.57 | +0.2 |
3,640,848 | - | yhiQ | b3497 | 0.59 | +0.4 |
3,640,861 | + | yhiQ | b3497 | 0.61 | +0.1 |
3,640,903 | - | yhiQ | b3497 | 0.66 | -0.2 |
3,640,932 | - | yhiQ | b3497 | 0.70 | +0.7 |
3,641,043 | + | yhiQ | b3497 | 0.85 | -0.1 |
3,641,071 | - | yhiQ | b3497 | 0.89 | -2.1 |
3,641,078 | + | yhiQ | b3497 | 0.90 | -0.5 |
3,641,119 | + | +1.0 | |||
3,641,166 | + | +0.7 | |||
3,641,166 | + | -0.1 | |||
3,641,174 | - | +0.4 | |||
3,641,174 | - | +0.3 | |||
3,641,174 | - | +0.6 | |||
3,641,199 | - | +0.4 | |||
3,641,215 | - | +0.0 | |||
3,641,224 | + | +1.0 | |||
3,641,368 | + | prlC | b3498 | 0.10 | +1.1 |
3,641,376 | - | prlC | b3498 | 0.10 | +0.7 |
3,641,378 | - | prlC | b3498 | 0.11 | +1.6 |
3,641,530 | + | prlC | b3498 | 0.18 | +1.0 |
3,641,530 | + | prlC | b3498 | 0.18 | +0.1 |
3,641,573 | + | prlC | b3498 | 0.20 | +1.9 |
3,641,573 | - | prlC | b3498 | 0.20 | +1.0 |
3,641,573 | - | prlC | b3498 | 0.20 | +0.8 |
3,641,643 | - | prlC | b3498 | 0.23 | +0.8 |
3,641,689 | + | prlC | b3498 | 0.26 | +1.1 |
3,641,702 | - | prlC | b3498 | 0.26 | +0.7 |
3,641,771 | + | prlC | b3498 | 0.30 | +0.7 |
3,641,771 | + | prlC | b3498 | 0.30 | +1.5 |
3,641,772 | - | prlC | b3498 | 0.30 | +0.4 |
3,641,779 | - | prlC | b3498 | 0.30 | +0.7 |
3,641,779 | - | prlC | b3498 | 0.30 | +1.6 |
3,641,880 | - | prlC | b3498 | 0.35 | +0.8 |
3,641,934 | + | prlC | b3498 | 0.38 | +0.5 |
3,641,938 | + | prlC | b3498 | 0.38 | +0.6 |
3,641,988 | - | prlC | b3498 | 0.40 | +2.0 |
3,641,988 | - | prlC | b3498 | 0.40 | +0.8 |
3,641,989 | + | prlC | b3498 | 0.40 | +0.7 |
3,642,100 | + | prlC | b3498 | 0.46 | +1.5 |
3,642,100 | + | prlC | b3498 | 0.46 | +1.9 |
3,642,166 | + | prlC | b3498 | 0.49 | +0.6 |
3,642,166 | + | prlC | b3498 | 0.49 | +0.9 |
3,642,166 | + | prlC | b3498 | 0.49 | +1.2 |
3,642,174 | - | prlC | b3498 | 0.49 | +1.0 |
3,642,203 | - | prlC | b3498 | 0.51 | +0.9 |
3,642,203 | - | prlC | b3498 | 0.51 | +1.4 |
3,642,387 | - | prlC | b3498 | 0.60 | -0.1 |
3,642,387 | - | prlC | b3498 | 0.60 | +1.4 |
3,642,478 | - | prlC | b3498 | 0.64 | +1.0 |
3,642,481 | + | prlC | b3498 | 0.65 | +0.8 |
3,642,487 | + | prlC | b3498 | 0.65 | +0.2 |
3,642,491 | - | prlC | b3498 | 0.65 | +1.2 |
3,642,491 | - | prlC | b3498 | 0.65 | +2.4 |
3,642,523 | - | prlC | b3498 | 0.67 | +1.3 |
3,642,523 | - | prlC | b3498 | 0.67 | +1.1 |
3,642,525 | - | prlC | b3498 | 0.67 | -0.1 |
3,642,525 | - | prlC | b3498 | 0.67 | +0.9 |
3,642,527 | + | prlC | b3498 | 0.67 | +0.8 |
3,642,534 | + | prlC | b3498 | 0.67 | +0.4 |
3,642,534 | + | prlC | b3498 | 0.67 | +0.5 |
3,642,543 | - | prlC | b3498 | 0.68 | +1.0 |
3,642,551 | + | prlC | b3498 | 0.68 | +0.5 |
3,642,558 | - | prlC | b3498 | 0.68 | -0.1 |
3,642,569 | - | prlC | b3498 | 0.69 | +0.5 |
3,642,647 | + | prlC | b3498 | 0.73 | -0.2 |
3,642,647 | + | prlC | b3498 | 0.73 | +0.6 |
3,642,703 | + | prlC | b3498 | 0.75 | +1.2 |
3,642,708 | - | prlC | b3498 | 0.76 | +1.0 |
3,642,708 | - | prlC | b3498 | 0.76 | +1.6 |
3,642,730 | - | prlC | b3498 | 0.77 | +1.0 |
3,642,730 | - | prlC | b3498 | 0.77 | +0.9 |
3,642,730 | - | prlC | b3498 | 0.77 | +1.0 |
3,642,783 | - | prlC | b3498 | 0.79 | -0.3 |
3,642,783 | - | prlC | b3498 | 0.79 | +0.6 |
3,642,789 | - | prlC | b3498 | 0.80 | +0.3 |
3,642,789 | - | prlC | b3498 | 0.80 | -0.3 |
3,642,814 | - | prlC | b3498 | 0.81 | +0.6 |
3,642,814 | - | prlC | b3498 | 0.81 | -0.0 |
3,642,846 | + | prlC | b3498 | 0.82 | +1.5 |
3,642,867 | - | prlC | b3498 | 0.83 | +1.0 |
3,642,873 | + | prlC | b3498 | 0.84 | +0.8 |
3,642,888 | - | prlC | b3498 | 0.84 | +0.9 |
3,642,892 | + | prlC | b3498 | 0.85 | +1.2 |
3,642,892 | + | prlC | b3498 | 0.85 | -0.7 |
3,642,902 | + | prlC | b3498 | 0.85 | -0.2 |
3,642,902 | + | prlC | b3498 | 0.85 | +1.4 |
3,642,907 | + | prlC | b3498 | 0.85 | +1.6 |
3,642,927 | - | prlC | b3498 | 0.86 | -0.0 |
3,642,927 | - | prlC | b3498 | 0.86 | -0.6 |
3,642,990 | - | prlC | b3498 | 0.89 | +0.7 |
3,643,012 | + | +0.6 | |||
3,643,016 | + | +0.8 | |||
3,643,020 | - | +0.6 | |||
3,643,020 | - | +0.6 | |||
3,643,067 | + | +0.5 | |||
3,643,071 | - | +1.0 | |||
3,643,072 | + | -0.4 | |||
3,643,072 | + | +0.1 | |||
3,643,090 | - | +0.2 | |||
3,643,217 | + | -1.1 | |||
3,643,217 | + | +0.3 | |||
3,643,227 | + | +1.4 | |||
3,643,261 | + | -0.3 | |||
3,643,261 | + | -1.7 | |||
3,643,261 | + | +0.0 | |||
3,643,269 | + | +0.3 | |||
3,643,270 | - | -1.5 | |||
3,643,274 | + | -0.5 | |||
3,643,274 | + | -0.2 | |||
3,643,282 | - | +0.5 | |||
3,643,333 | + | -0.7 | |||
3,643,341 | - | +0.6 | |||
3,643,351 | - | -0.2 | |||
3,643,399 | + | -0.3 | |||
3,643,399 | + | +0.8 | |||
3,643,407 | - | +0.3 | |||
3,643,407 | - | +0.2 | |||
3,643,409 | + | -0.2 | |||
3,643,435 | - | -0.1 | |||
3,643,435 | - | +0.1 | |||
3,643,435 | - | -0.0 | |||
3,643,468 | + | +0.2 | |||
3,643,537 | - | yhiR | b3499 | 0.15 | +1.0 |
3,643,541 | - | yhiR | b3499 | 0.16 | +0.8 |
3,643,541 | - | yhiR | b3499 | 0.16 | -1.3 |
3,643,603 | + | yhiR | b3499 | 0.23 | +0.5 |
3,643,603 | + | yhiR | b3499 | 0.23 | -0.9 |
3,643,723 | + | yhiR | b3499 | 0.37 | -0.0 |
3,643,745 | + | yhiR | b3499 | 0.40 | +0.6 |
3,643,753 | - | yhiR | b3499 | 0.41 | +0.4 |
3,643,941 | - | yhiR | b3499 | 0.63 | +0.6 |
3,643,955 | + | yhiR | b3499 | 0.65 | +1.3 |
3,643,987 | + | yhiR | b3499 | 0.69 | -0.8 |
3,643,992 | + | yhiR | b3499 | 0.69 | -0.7 |
3,644,036 | + | yhiR | b3499 | 0.74 | -0.4 |
3,644,086 | + | yhiR | b3499 | 0.80 | +1.0 |
3,644,086 | + | yhiR | b3499 | 0.80 | -0.3 |
3,644,092 | - | yhiR | b3499 | 0.81 | -0.0 |
3,644,110 | - | yhiR | b3499 | 0.83 | -0.2 |
3,644,110 | - | yhiR | b3499 | 0.83 | -0.7 |
3,644,116 | - | yhiR | b3499 | 0.84 | +0.4 |
3,644,182 | + | +0.3 |
Or see this region's nucleotide sequence