Strain Fitness in Escherichia coli BW25113 around b2555

Experiment: undecene 5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyfhA and yfhG overlap by 11 nucleotidesyfhG and yfhK are separated by 164 nucleotides b2554: yfhA - predicted DNA-binding response regulator in two-component system (NCBI), at 2,685,491 to 2,686,825 yfhA b2555: yfhG - hypothetical protein (NCBI), at 2,686,815 to 2,687,528 yfhG b2556: yfhK - putative 2-component sensor protein (VIMSS), at 2,687,693 to 2,689,120 yfhK Position (kb) 2686 2687 2688Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2685.821 kb on - strand, within yfhAat 2685.821 kb on - strand, within yfhAat 2685.863 kb on - strand, within yfhAat 2685.885 kb on - strand, within yfhAat 2685.885 kb on - strand, within yfhAat 2685.897 kb on - strand, within yfhAat 2686.064 kb on + strand, within yfhAat 2686.079 kb on + strand, within yfhAat 2686.089 kb on + strandat 2686.091 kb on + strand, within yfhAat 2686.091 kb on + strand, within yfhAat 2686.158 kb on - strand, within yfhAat 2686.162 kb on - strand, within yfhAat 2686.250 kb on + strand, within yfhAat 2686.282 kb on + strand, within yfhAat 2686.294 kb on - strand, within yfhAat 2686.323 kb on + strand, within yfhAat 2686.323 kb on + strand, within yfhAat 2686.331 kb on - strand, within yfhAat 2686.425 kb on - strand, within yfhAat 2686.487 kb on - strand, within yfhAat 2686.487 kb on - strand, within yfhAat 2686.514 kb on - strand, within yfhAat 2686.742 kb on - strandat 2686.768 kb on + strandat 2686.846 kb on - strandat 2686.930 kb on - strand, within yfhGat 2686.971 kb on + strand, within yfhGat 2687.022 kb on + strand, within yfhGat 2687.022 kb on + strand, within yfhGat 2687.025 kb on - strand, within yfhGat 2687.025 kb on - strand, within yfhGat 2687.094 kb on - strand, within yfhGat 2687.107 kb on + strand, within yfhGat 2687.280 kb on - strand, within yfhGat 2687.347 kb on + strand, within yfhGat 2687.347 kb on + strand, within yfhGat 2687.435 kb on + strand, within yfhGat 2687.435 kb on + strand, within yfhGat 2687.549 kb on + strandat 2687.577 kb on + strandat 2687.577 kb on + strandat 2687.582 kb on + strandat 2687.582 kb on + strandat 2687.590 kb on - strandat 2687.610 kb on + strandat 2687.641 kb on + strandat 2687.649 kb on - strandat 2687.765 kb on - strandat 2687.765 kb on - strandat 2687.776 kb on + strandat 2687.822 kb on + strandat 2687.933 kb on - strand, within yfhKat 2687.950 kb on - strand, within yfhKat 2687.950 kb on - strand, within yfhKat 2687.974 kb on + strand, within yfhKat 2688.002 kb on - strand, within yfhKat 2688.013 kb on + strand, within yfhKat 2688.021 kb on + strand, within yfhKat 2688.131 kb on - strand, within yfhKat 2688.160 kb on + strand, within yfhKat 2688.168 kb on - strand, within yfhKat 2688.321 kb on - strand, within yfhKat 2688.421 kb on + strand, within yfhKat 2688.467 kb on + strand, within yfhKat 2688.526 kb on + strand, within yfhKat 2688.526 kb on + strand, within yfhK

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction undecene 5 vol%
remove
2,685,821 - yfhA b2554 0.25 -1.0
2,685,821 - yfhA b2554 0.25 -0.3
2,685,863 - yfhA b2554 0.28 -1.9
2,685,885 - yfhA b2554 0.30 -3.5
2,685,885 - yfhA b2554 0.30 -1.6
2,685,897 - yfhA b2554 0.30 -0.9
2,686,064 + yfhA b2554 0.43 -1.5
2,686,079 + yfhA b2554 0.44 -1.0
2,686,089 + +2.1
2,686,091 + yfhA b2554 0.45 -0.9
2,686,091 + yfhA b2554 0.45 -1.9
2,686,158 - yfhA b2554 0.50 -1.4
2,686,162 - yfhA b2554 0.50 -0.4
2,686,250 + yfhA b2554 0.57 -0.9
2,686,282 + yfhA b2554 0.59 -1.5
2,686,294 - yfhA b2554 0.60 -2.2
2,686,323 + yfhA b2554 0.62 -0.0
2,686,323 + yfhA b2554 0.62 -1.7
2,686,331 - yfhA b2554 0.63 -0.5
2,686,425 - yfhA b2554 0.70 -1.1
2,686,487 - yfhA b2554 0.75 -1.9
2,686,487 - yfhA b2554 0.75 -0.7
2,686,514 - yfhA b2554 0.77 -1.0
2,686,742 - -1.9
2,686,768 + -1.1
2,686,846 - -1.0
2,686,930 - yfhG b2555 0.16 -1.1
2,686,971 + yfhG b2555 0.22 -1.3
2,687,022 + yfhG b2555 0.29 -0.9
2,687,022 + yfhG b2555 0.29 -1.9
2,687,025 - yfhG b2555 0.29 -0.7
2,687,025 - yfhG b2555 0.29 -0.8
2,687,094 - yfhG b2555 0.39 -1.2
2,687,107 + yfhG b2555 0.41 -1.7
2,687,280 - yfhG b2555 0.65 -0.4
2,687,347 + yfhG b2555 0.75 -0.1
2,687,347 + yfhG b2555 0.75 -0.3
2,687,435 + yfhG b2555 0.87 -0.9
2,687,435 + yfhG b2555 0.87 -1.4
2,687,549 + -0.6
2,687,577 + -0.7
2,687,577 + +1.5
2,687,582 + -1.6
2,687,582 + -1.5
2,687,590 - +0.8
2,687,610 + -1.2
2,687,641 + -1.0
2,687,649 - +0.3
2,687,765 - +0.4
2,687,765 - +0.7
2,687,776 + -0.1
2,687,822 + +0.0
2,687,933 - yfhK b2556 0.17 +0.3
2,687,950 - yfhK b2556 0.18 -2.3
2,687,950 - yfhK b2556 0.18 -0.4
2,687,974 + yfhK b2556 0.20 -1.9
2,688,002 - yfhK b2556 0.22 -0.5
2,688,013 + yfhK b2556 0.22 -1.3
2,688,021 + yfhK b2556 0.23 -0.8
2,688,131 - yfhK b2556 0.31 -0.3
2,688,160 + yfhK b2556 0.33 +0.1
2,688,168 - yfhK b2556 0.33 -0.4
2,688,321 - yfhK b2556 0.44 -0.9
2,688,421 + yfhK b2556 0.51 -1.1
2,688,467 + yfhK b2556 0.54 +0.8
2,688,526 + yfhK b2556 0.58 -1.5
2,688,526 + yfhK b2556 0.58 -2.9

Or see this region's nucleotide sequence