Strain Fitness in Escherichia coli BW25113 around b2555
Experiment: undecene 5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | undecene 5 vol% |
---|---|---|---|---|---|
remove | |||||
2,685,821 | - | yfhA | b2554 | 0.25 | -1.0 |
2,685,821 | - | yfhA | b2554 | 0.25 | -0.3 |
2,685,863 | - | yfhA | b2554 | 0.28 | -1.9 |
2,685,885 | - | yfhA | b2554 | 0.30 | -3.5 |
2,685,885 | - | yfhA | b2554 | 0.30 | -1.6 |
2,685,897 | - | yfhA | b2554 | 0.30 | -0.9 |
2,686,064 | + | yfhA | b2554 | 0.43 | -1.5 |
2,686,079 | + | yfhA | b2554 | 0.44 | -1.0 |
2,686,089 | + | +2.1 | |||
2,686,091 | + | yfhA | b2554 | 0.45 | -0.9 |
2,686,091 | + | yfhA | b2554 | 0.45 | -1.9 |
2,686,158 | - | yfhA | b2554 | 0.50 | -1.4 |
2,686,162 | - | yfhA | b2554 | 0.50 | -0.4 |
2,686,250 | + | yfhA | b2554 | 0.57 | -0.9 |
2,686,282 | + | yfhA | b2554 | 0.59 | -1.5 |
2,686,294 | - | yfhA | b2554 | 0.60 | -2.2 |
2,686,323 | + | yfhA | b2554 | 0.62 | -0.0 |
2,686,323 | + | yfhA | b2554 | 0.62 | -1.7 |
2,686,331 | - | yfhA | b2554 | 0.63 | -0.5 |
2,686,425 | - | yfhA | b2554 | 0.70 | -1.1 |
2,686,487 | - | yfhA | b2554 | 0.75 | -1.9 |
2,686,487 | - | yfhA | b2554 | 0.75 | -0.7 |
2,686,514 | - | yfhA | b2554 | 0.77 | -1.0 |
2,686,742 | - | -1.9 | |||
2,686,768 | + | -1.1 | |||
2,686,846 | - | -1.0 | |||
2,686,930 | - | yfhG | b2555 | 0.16 | -1.1 |
2,686,971 | + | yfhG | b2555 | 0.22 | -1.3 |
2,687,022 | + | yfhG | b2555 | 0.29 | -0.9 |
2,687,022 | + | yfhG | b2555 | 0.29 | -1.9 |
2,687,025 | - | yfhG | b2555 | 0.29 | -0.7 |
2,687,025 | - | yfhG | b2555 | 0.29 | -0.8 |
2,687,094 | - | yfhG | b2555 | 0.39 | -1.2 |
2,687,107 | + | yfhG | b2555 | 0.41 | -1.7 |
2,687,280 | - | yfhG | b2555 | 0.65 | -0.4 |
2,687,347 | + | yfhG | b2555 | 0.75 | -0.1 |
2,687,347 | + | yfhG | b2555 | 0.75 | -0.3 |
2,687,435 | + | yfhG | b2555 | 0.87 | -0.9 |
2,687,435 | + | yfhG | b2555 | 0.87 | -1.4 |
2,687,549 | + | -0.6 | |||
2,687,577 | + | -0.7 | |||
2,687,577 | + | +1.5 | |||
2,687,582 | + | -1.6 | |||
2,687,582 | + | -1.5 | |||
2,687,590 | - | +0.8 | |||
2,687,610 | + | -1.2 | |||
2,687,641 | + | -1.0 | |||
2,687,649 | - | +0.3 | |||
2,687,765 | - | +0.4 | |||
2,687,765 | - | +0.7 | |||
2,687,776 | + | -0.1 | |||
2,687,822 | + | +0.0 | |||
2,687,933 | - | yfhK | b2556 | 0.17 | +0.3 |
2,687,950 | - | yfhK | b2556 | 0.18 | -2.3 |
2,687,950 | - | yfhK | b2556 | 0.18 | -0.4 |
2,687,974 | + | yfhK | b2556 | 0.20 | -1.9 |
2,688,002 | - | yfhK | b2556 | 0.22 | -0.5 |
2,688,013 | + | yfhK | b2556 | 0.22 | -1.3 |
2,688,021 | + | yfhK | b2556 | 0.23 | -0.8 |
2,688,131 | - | yfhK | b2556 | 0.31 | -0.3 |
2,688,160 | + | yfhK | b2556 | 0.33 | +0.1 |
2,688,168 | - | yfhK | b2556 | 0.33 | -0.4 |
2,688,321 | - | yfhK | b2556 | 0.44 | -0.9 |
2,688,421 | + | yfhK | b2556 | 0.51 | -1.1 |
2,688,467 | + | yfhK | b2556 | 0.54 | +0.8 |
2,688,526 | + | yfhK | b2556 | 0.58 | -1.5 |
2,688,526 | + | yfhK | b2556 | 0.58 | -2.9 |
Or see this region's nucleotide sequence