Strain Fitness in Escherichia coli BW25113 around b2346
Experiment: undecene 5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | undecene 5 vol% |
---|---|---|---|---|---|
remove | |||||
2,462,184 | - | -1.1 | |||
2,462,208 | - | -0.3 | |||
2,462,252 | - | -0.5 | |||
2,462,309 | - | -4.0 | |||
2,462,309 | - | -3.1 | |||
2,462,309 | - | -3.7 | |||
2,462,309 | - | -3.3 | |||
2,462,333 | - | -1.6 | |||
2,462,336 | - | -4.1 | |||
2,462,344 | - | -3.6 | |||
2,462,344 | - | -2.6 | |||
2,462,394 | - | vacJ | b2346 | 0.16 | -3.7 |
2,462,399 | - | vacJ | b2346 | 0.17 | -2.1 |
2,462,403 | - | vacJ | b2346 | 0.17 | -3.2 |
2,462,405 | - | vacJ | b2346 | 0.17 | -4.1 |
2,462,406 | - | vacJ | b2346 | 0.17 | -3.7 |
2,462,421 | - | vacJ | b2346 | 0.19 | -4.2 |
2,462,438 | - | vacJ | b2346 | 0.22 | -3.2 |
2,462,447 | + | vacJ | b2346 | 0.23 | -3.6 |
2,462,465 | + | vacJ | b2346 | 0.25 | -4.5 |
2,462,471 | - | vacJ | b2346 | 0.26 | -2.5 |
2,462,491 | - | vacJ | b2346 | 0.29 | -2.1 |
2,462,507 | - | vacJ | b2346 | 0.31 | -3.1 |
2,462,619 | + | vacJ | b2346 | 0.46 | -2.0 |
2,462,619 | + | vacJ | b2346 | 0.46 | -2.6 |
2,462,623 | + | vacJ | b2346 | 0.46 | -2.1 |
2,462,708 | - | vacJ | b2346 | 0.57 | -2.3 |
2,462,799 | - | vacJ | b2346 | 0.69 | -4.0 |
2,462,878 | + | vacJ | b2346 | 0.80 | -4.8 |
2,462,909 | + | vacJ | b2346 | 0.84 | -3.5 |
2,462,913 | - | vacJ | b2346 | 0.85 | -1.8 |
2,463,052 | + | -0.7 | |||
2,463,052 | + | -1.0 | |||
2,463,126 | + | -1.7 | |||
2,463,170 | + | -0.6 | |||
2,463,186 | + | -0.7 | |||
2,463,194 | - | +1.0 | |||
2,463,365 | - | +0.0 | |||
2,463,415 | - | +0.5 | |||
2,463,431 | - | yfdC | b2347 | 0.12 | -0.8 |
2,463,473 | + | yfdC | b2347 | 0.16 | +0.5 |
2,463,568 | - | yfdC | b2347 | 0.26 | +0.4 |
2,463,568 | - | yfdC | b2347 | 0.26 | +0.0 |
2,463,648 | - | yfdC | b2347 | 0.35 | +0.7 |
2,463,683 | + | yfdC | b2347 | 0.39 | -0.6 |
2,463,728 | + | yfdC | b2347 | 0.43 | -0.3 |
2,463,736 | + | yfdC | b2347 | 0.44 | -0.4 |
2,463,736 | + | yfdC | b2347 | 0.44 | +0.7 |
2,463,777 | + | yfdC | b2347 | 0.49 | -0.6 |
2,463,807 | - | yfdC | b2347 | 0.52 | +0.0 |
2,463,807 | - | yfdC | b2347 | 0.52 | -1.0 |
2,463,811 | + | yfdC | b2347 | 0.52 | +0.2 |
2,463,855 | - | yfdC | b2347 | 0.57 | -0.3 |
2,463,858 | + | yfdC | b2347 | 0.57 | -1.0 |
2,463,858 | + | yfdC | b2347 | 0.57 | +0.2 |
2,463,861 | - | yfdC | b2347 | 0.58 | +1.0 |
2,463,861 | - | yfdC | b2347 | 0.58 | +0.6 |
2,463,868 | - | yfdC | b2347 | 0.58 | +0.0 |
2,463,926 | - | yfdC | b2347 | 0.65 | -0.7 |
2,463,980 | + | yfdC | b2347 | 0.70 | -1.3 |
2,463,984 | + | yfdC | b2347 | 0.71 | +0.6 |
2,463,997 | + | yfdC | b2347 | 0.72 | -0.6 |
2,464,005 | - | yfdC | b2347 | 0.73 | +0.5 |
2,464,005 | - | yfdC | b2347 | 0.73 | +1.9 |
2,464,007 | + | yfdC | b2347 | 0.73 | +0.7 |
Or see this region's nucleotide sequence